MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-181-P2o1

Family name MIR-181 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-181b-1
Paralogues Pma-Mir-181-P1o1  Pma-Mir-181-P1o2  Pma-Mir-181-P2o2 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046090.1: 2942239-2942311 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2o1)		 Mir-181-P2o1 NC_046090.1: 2942239-2942311 [-] UCSC Ensembl
Mir-181-P1o1 NC_046090.1: 2946536-2946600 [-] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
GCCUCGCAAGCAAUCGGCAGGAUCUCGCUUGACAUUCAGUGCUGUCGGUGGGUGUUGCGCGUGCCUGCCUCGAACACAUAACCCAGGGAGCACUGAAUGCACACCGUGAUCCGAGAGAGACUUCCCAGCCACG
Get precursor sequence
Structure
        10          20         30        40        50        60       
GCCUCGCAAGCAAUCGGCA--     U  CU-| A           G  GG     GUUGCGCGUGCCU 
                     GGAUC CG   UG CAUUCAGUGCU UC  UGGGU             \
                     CCUAG GC   AC GUAAGUCACGA GG  ACCCA             G
GCACCGACCCUUCAGAGAGAG     U  CAC^ -           G  --     AUACACAAGCUCC 
 130       120       110       100         90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-181-P2o1_5p
mirBase accessionMIMAT0019488
Sequence 
0- GACAUUCAGUGCUGUCGGUGGGU -23
Get sequence
Star sequence

Pma-Mir-181-P2o1_3p*
mirBase accessionMIMAT0019489
Sequence 
52- CCAGGGAGCACUGAAUGCACA -73
Get sequence