Mir-181-P1o2

MirGeneDB ID

Pma-Mir-181-P1o2

Family name

MIR-181 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-181-P1o1 Pma-Mir-181-P2o1 Pma-Mir-181-P2o2

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046118.1: 4215267-4215339 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1o2)

Mir-181-P1o2 NC_046118.1: 4215267-4215339 [+] UCSC Ensembl
Mir-181-P2o2 NC_046118.1: 4216042-4216102 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

GUCAAGGCGGGGUCGAGGCGGGCCCCGUGGAACAUUCAACGCUGUCGGUGAGUUUUGUUUGAACUCCUCAUAUGAAAAUAAACCAUCGACCGUUGACUGUACCACGUGACCCGGCCGUUACCACGGCAACACC

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Structure

        10          20        30        40        50        60       
GUCAAGGCGGGGUCGAGG--|   CCC     A   U      CU       A  UUUGUUUGAACUC 
                    CGGG   CGUGG ACA UCAACG  GUCGGUG GU             C
                    GCCC   GCACC UGU AGUUGC  CAGCUAC CA             U
CCACAACGGCACCAUUGCCG^   AGU     A   C      --       -  AAUAAAAGUAUAC 
 130       120       110       100          90         80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-181-P1o2_5p

mirBase accession

None

Sequence

0- AACAUUCAACGCUGUCGGUGAGU -23

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Star sequence

Pma-Mir-181-P1o2_3p*

mirBase accession

None

Sequence

51- ACCAUCGACCGUUGACUGUACC -73

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