MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-2705

Family name MIR-2705 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Cte-Mir-2705  Efe-Mir-2705 
Node of Origin (locus) Pleistoannelida
Node of Origin (family) Pleistoannelida
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000001.1: 66337316-66337369 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2705)		 Mir-1987 JAPTHN010000001.1: 66332419-66332476 [-] Ensembl
Mir-2705 JAPTHN010000001.1: 66337316-66337369 [-] Ensembl
Seed CUGCAAG
Precursor
(pre-Mir +30nt flank)		 
GGACUUCAUGAGAUACUGCUUGUUAGUCAGGCGGUGCUUACCUUUGCAGCUGAUGAUUUGCCAUCUGCAAGGUAAGUGCUGUCUGCCUCUCACAGCCUUGUCAUCUUGGACUAG
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Structure
        10         20         30        40        50       
GGACUUCAUGAGAUACU-   -| UU  U       UG        U    C  AUGA 
                  GCU UG  AG CAGGCGG  CUUACCUU GCAG UG    \
                  CGA AC  UC GUCUGUC  GAAUGGAA CGUC AC    U
GAUCAGGUUCUACUGUUC   C^ UC  C       GU        -    U  CGUU 
  110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-2705_5p*
mirBase accessionNone
Sequence 
0- GCGGUGCUUACCUUUGCAGCUG -22
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Mature sequence

Pdu-Mir-2705_3p
mirBase accessionNone
Sequence 
33- UCUGCAAGGUAAGUGCUGUCU -54
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