MirGeneDB 3.0
MirGeneDB ID

Pbv-Mir-142-P4

Family name MIR-142 (all species)
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-142
Paralogues Pbv-Mir-142-P4-v1 
Orthologues Aca-Mir-142-P4-v1  Ami-Mir-142-P4-v1  Cpi-Mir-142-P4-v1  Dre-Mir-142-P4-v1  Gja-Mir-142-P4-v1  Gmo-Mir-142-P4-v1  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mun-Mir-142-P4  Tni-Mir-142-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE953330.1: 386981-387041 [-]
Clustered miRNAs
(< 50kb from Mir-142-P4-v2)		 Mir-142-P4-v4 KE953330.1: 386979-387043 [-]
Mir-142-P4-v1 KE953330.1: 386981-387041 [-]
Mir-142-P4-v2 KE953330.1: 386981-387041 [-]
Mir-142-P4-v3 KE953330.1: 386981-387041 [-]
Variant

Pbv-Mir-142-P4-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
CAGCUACAUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUUGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAA
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Structure
        10          20        30        40        50          
CAGCUACAUUUUAAGGA--|    G                 A         UAAACGCUU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AACAACGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Pbv-Mir-142-P4-v2_5p*
mirBase accessionMIMAT0038953
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Pbv-Mir-142-P4-v2_3p
mirBase accessionMIMAT0038954
Sequence 
39- GUAGUGUUUCCUACUUUAUGGA -61
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Variant

Pbv-Mir-142-P4-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
CAGCUACAUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUUGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAA
Get precursor sequence
Structure
        10          20        30        40        50          
CAGCUACAUUUUAAGGA--|    G                 A         UAAACGCUU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AACAACGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Pbv-Mir-142-P4-v1_5p
mirBase accessionMIMAT0038953
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Pbv-Mir-142-P4-v1_3p*
mirBase accessionMIMAT0038954
Sequence 
40- UAGUGUUUCCUACUUUAUGGA -61
Get sequence
Variant

Pbv-Mir-142-P4-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
CAGCUACAUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUUGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAA
Get precursor sequence
Structure
        10          20        30        40        50          
CAGCUACAUUUUAAGGA--|    G                 A         UAAACGCUU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AACAACGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Pbv-Mir-142-P4-v3_5p*
mirBase accessionMIMAT0038953
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Pbv-Mir-142-P4-v3_3p
mirBase accessionMIMAT0038954
Sequence 
38- UGUAGUGUUUCCUACUUUAUGGA -61
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Variant

Pbv-Mir-142-P4-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
UACAGCUACAUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUUGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAAGG
Get precursor sequence
Structure
        10          20        30        40        50        60  
UACAGCUACAUUUUAAGG--|     G                 A         UAAACGCUU 
                    ACAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                    UGUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
GGAACAACGGAGGCAACGAG^     G                 C         UGAACCUGU 
   120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Pbv-Mir-142-P4-v4_5p
mirBase accessionMIMAT0038953
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Pbv-Mir-142-P4-v4_3p*
mirBase accessionMIMAT0038954
Sequence 
43- AGUGUUUCCUACUUUAUGGAUG -65
Get sequence