MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-5579

Family name MIR-5579 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-5579  Hsa-Mir-5579 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054688.2: 81489775-81489832 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-5579)
Mir-708 CM054688.2: 81469692-81469760 [-] UCSC Ensembl
Mir-5579 CM054688.2: 81489775-81489832 [-] UCSC Ensembl
Seed AUGGUAC
Precursor
(pre-Mir +30nt flank)
GUGUGUGUAAGAACCAUGUGGGUGAUUUAAUAUGGUACUCCUUAAGCUAACAGGCCCCUGUCACCGUUCGCUUAAGGAGUACCAGGUCAAAUCACCCACAAACACUGUGGAGGUGAAC
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Structure
        10          20        30        40        50        
GUGUGUGUAAGAACCAU--|          A  A               U   AGGCCC 
                   GUGGGUGAUUU AU UGGUACUCCUUAAGC AAC      C
                   CACCCACUAAA UG ACCAUGAGGAAUUCG UUG      U
CAAGUGGAGGUGUCACAAA^          C  G               C   CCACUG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br Li Li
Mature sequence

Pab-Mir-5579_5p (predicted)

mirBase accessionNone
Sequence
0- UAUGGUACUCCUUAAGCUAACA -22
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Star sequence

Pab-Mir-5579_3p*

mirBase accessionNone
Sequence
36- UUCGCUUAAGGAGUACCAGGUC -58
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