MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-5579

Family name MIR-5579 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-5579  Pab-Mir-5579 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021925.1: 57831081-57831138 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-5579)		 Mir-5579 CM021925.1: 57831081-57831138 [+] UCSC Ensembl
Mir-708 CM021925.1: 57852958-57853026 [+] UCSC Ensembl
Seed UUGGUAC
Precursor
(pre-Mir +30nt flank)		 
GUGUGUGUAAGAACCAUGUGGGUGAUUUGAUUUGGUACUCCUUAAGCUAACAGGCCCAUGUCACCAUUAGCUUAAGGAGUACCAGAUCAAAGCACUCACAGUGUGGAGGUGAACAGAG
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Structure
        10          20        30        40        50        
GUGUGUGUAAGAACCAU--|      A                         CAGGCCC 
                   GUGGGUG UUUGAUUUGGUACUCCUUAAGCUAA       A
                   CACUCAC AAACUAGACCAUGAGGAAUUCGAUU       U
GAGACAAGUGGAGGUGUGA^      G                         ACCACUG 
      110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
To
Mature sequence

Cja-Mir-5579_5p (predicted)
mirBase accessionNone
Sequence 
0- UUUGGUACUCCUUAAGCUAACA -22
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Star sequence

Cja-Mir-5579_3p* (predicted)
mirBase accessionNone
Sequence 
36- UUAGCUUAAGGAGUACCAGAUC -58
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