| MirGeneDB ID | Pab-Mir-488 |
|---|
| Family name |
MIR-488 (all species) |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-488
Cfa-Mir-488
Cja-Mir-488
Dno-Mir-488
Eca-Mir-488
Ete-Mir-488
Hsa-Mir-488
Laf-Mir-488
Mml-Mir-488
Mmr-Mir-488
Mmu-Mir-488
Ocu-Mir-488
Rno-Mir-488
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 72923020-72923078 [+]
UCSC
Ensembl
|
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| Seed |
UGAAAGG |
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Precursor
(pre-Mir +30nt flank) |
UAGAGUGGAAAAUUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAAGUUUCCAAGUUGUUUGAAAGGCUAUUUCUUGGUCAGAUGACUCUCAAUUUCUUCUGGAAGACUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAGAGUGGAAAAUUUCA--| A CU C U A C AAGUUU
GAGA UCAUCU CC AGA AAUGGC CU UCAAAC \
CUCU AGUAGA GG UCU UUAUCG GA AGUUUG C
CUCAGAAGGUCUUCUUUAA^ C CU U - - A UUGAAC
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-488_5p* |
| mirBase accession | None |
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| Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-488_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUGAAAGGCUAUUUCUUGGUC -59
Get sequence
|
|---|
