| MirGeneDB ID | Bta-Mir-488 |
|---|
| Family name |
MIR-488 (all species) |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-488
|
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| Paralogues |
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| Orthologues |
Cfa-Mir-488
Cja-Mir-488
Dno-Mir-488
Eca-Mir-488
Ete-Mir-488
Hsa-Mir-488
Laf-Mir-488
Mml-Mir-488
Mmr-Mir-488
Mmu-Mir-488
Ocu-Mir-488
Pab-Mir-488
Rno-Mir-488
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037343.1: 58247524-58247582 [-]
UCSC
Ensembl
|
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| Seed |
UGAAAGG |
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Precursor
(pre-Mir +30nt flank) |
CAGCGUGGAAGACUUCAGAGAAUCAUCUCUCCCAGAUAAUGGCACUCUCAAACAGGUUUCCAGGUUGUUUGAAAGGCUGUUUCUUGGUCAGAAGACUCUCAAUUCCUUCUGGAAGCCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGCGUGGAAGACUUCA--| A A CU C U A C AGGUUU
GAGA UC UCU CC AGA AAUGGC CU UCAAAC \
CUCU AG AGA GG UCU UUGUCG GA AGUUUG C
CUCCGAAGGUCUUCCUUAA^ C A CU U - - A UUGGAC
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-488_5p* |
| mirBase accession | None |
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| Sequence |
0- CCCAGAUAAUGGCACUCUCAAAC -23
Get sequence
|
|---|
| Mature sequence |
Bta-Mir-488_3p |
| mirBase accession | MIMAT0009330 |
|---|
| Sequence |
38- UUGAAAGGCUGUUUCUUGGUC -59
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-488
|
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