MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-320-P2a

Family name MIR-320 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-320-P1  Pab-Mir-320-P2b  Pab-Mir-320-P3  Pab-Mir-320-P4 
Orthologues Cfa-Mir-320  Cpo-Mir-320  Dno-Mir-320  Eca-Mir-320  Ete-Mir-320  Hsa-Mir-320-P2a  Laf-Mir-320  Mml-Mir-320-P2a  Mmu-Mir-320  Ocu-Mir-320  Rno-Mir-320 
Node of Origin (locus) Catarrhini
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054679.2: 116035167-116035220 [-] UCSC Ensembl
Seed AAAGCUG
Precursor
(pre-Mir +30nt flank)		 
UUGGAAACUAGUGUUUCAAAAAUAAAUUAAUCCCUCUCUUUCUAGUUCUUCCUAGAGUAAGGAAAAGCUGGGUUGAGAGGGCAAACAAAUUAACUAAUUAAUUAACUAAUUAAA
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Structure
        10        20        30          40        50      
UUGGAAACUAGUGUUUCAAAAAUAAAUUAAU--|      UU       C    UAG 
                                 CCCUCUC  UCUAGUU UUCC   A
                                 GGGAGAG  GGGUCGA AAGG   G
AAAUUAAUCAAUUAAUUAAUCAAUUAAACAAAC^      UU       A    AAU 
  110       100        90        80        70        60
Deep sequencing
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CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-320-P2a_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCCCUCUCUUUCUAGUUCUUCC -22
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Mature sequence

Pab-Mir-320-P2a_3p
mirBase accessionNone
Sequence 
32- AAAAGCUGGGUUGAGAGGGCAA -54
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