| MirGeneDB ID | Ocu-Mir-342 |
|---|
| Family name |
MIR-342 (all species) |
|---|
| Seed |
CUCACAC |
|---|
| Species |
Rabbit (Oryctolagus cuniculus) |
|---|
| MiRBase ID |
ocu-mir-342
|
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| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cpo-Mir-342
Dno-Mir-342
Ete-Mir-342
Hsa-Mir-342
Mml-Mir-342
Mmu-Mir-342
Rno-Mir-342
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(oryCun2_add) |
JABWOR010004011.1: 825985-826048 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCUCCAGCCUGAGAACCUGGGCUCGAGGUGAGGGGUGCUCUCUGUGCGUGAGGGACAUGGCAAUCGAAUUGUCUCACACAGAAAUCGCACCCUCUCCUCGGCCUGCUCAGCACCACGCAGCCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUCCAGCCUGAGAACCU--| U U - CUC CGUGA UGGCA
GGGC CGAGG GAGGG GUG UCUGUG GGGACA A
UCCG GCUCC CUCCC CGC AGACAC CUCUGU U
GUCCGACGCACCACGACUCG^ - U A UAA A---- UAAGC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ocu-Mir-342_5p* (predicted) |
| mirBase accession | MIMAT0048388 |
|---|
| Sequence |
0- AGGGGUGCUCUCUGUGCGUGAGGGACA -27
Get sequence
|
|---|
| Mature sequence |
Ocu-Mir-342_3p |
| mirBase accession | MIMAT0048389 |
|---|
| Sequence |
41- UCUCACACAGAAAUCGCACCCUC -64
Get sequence
|
|---|
