| MirGeneDB ID | Mml-Mir-342 |
|---|
| Family name |
MIR-342 (all species) |
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| Species |
Rhesus monkey (Macaca mulatta) |
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| MiRBase ID |
mml-mir-342
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| Paralogues |
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| Orthologues |
Bta-Mir-342
Cfa-Mir-342
Cja-Mir-342
Cpo-Mir-342
Dno-Mir-342
Eca-Mir-342
Ete-Mir-342
Hsa-Mir-342
Laf-Mir-342
Mmr-Mir-342
Mmu-Mir-342
Ocu-Mir-342
Pab-Mir-342
Rno-Mir-342
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_003339765.3_Mmul_10_traces) |
CM014342.1: 162324317-162324383 [+]
UCSC
Ensembl
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| Seed |
CUCACAC |
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Precursor
(pre-Mir +30nt flank) |
UGGCCAGCCUGUGAAACUGGGCUCAAGGUGAGGGGUGCUAUCUGUGAUUGAGGGACAUGGUUAAUGGAAUUGUCUCACACAGAAAUCGCACCCGUCACCUUGGCCUACUUAUCACCACCCCAAACAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGGCCAGCCUGUGAAAC--- U G UA--| AUUGA UGGUUA
UGGGC CAAGGUGA GGGUGC UCUGUG GGGACA \
AUCCG GUUCCACU CCCACG AGACAC CUCUGU A
GACAAACCCCACCACUAUUC - G CUAA^ A---- UAAGGU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The Drosha cut is supported by CAGE data (de Rie et al. 2017) although there is a second Drosha cut +1 on both the 5p and 3p arms and a second Dicer cut -4 on the 5p arm. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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| Star sequence |
Mml-Mir-342_5p* |
| mirBase accession | MIMAT0006282 |
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| Sequence |
0- AGGGGUGCUAUCUGUGAUUGAGGGACA -27
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mml-miR-342-5p
|
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| Mature sequence |
Mml-Mir-342_3p |
| mirBase accession | MIMAT0006283 |
|---|
| Sequence |
42- UCUCACACAGAAAUCGCACCCGUCA -67
Get sequence
|
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| Proposed targets |
TargetScanVert: mml-miR-342-3p
|
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