Mir-1421-P38

MirGeneDB ID

Oan-Mir-1421-P38

Family name

MIR-1421 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-1421n-1

Paralogues

Oan-Mir-1421-P1 Oan-Mir-1421-P2 Oan-Mir-1421-P3 Oan-Mir-1421-P4 Oan-Mir-1421-P5 Oan-Mir-1421-P6 Oan-Mir-1421-P7a Oan-Mir-1421-P7b Oan-Mir-1421-P7c Oan-Mir-1421-P8 Oan-Mir-1421-P9 Oan-Mir-1421-P10 Oan-Mir-1421-P11 Oan-Mir-1421-P12 Oan-Mir-1421-P13a Oan-Mir-1421-P13b Oan-Mir-1421-P14 Oan-Mir-1421-P15 Oan-Mir-1421-P16 Oan-Mir-1421-P17 Oan-Mir-1421-P18 Oan-Mir-1421-P19 Oan-Mir-1421-P20 Oan-Mir-1421-P21 Oan-Mir-1421-P22 Oan-Mir-1421-P23 Oan-Mir-1421-P24 Oan-Mir-1421-P25 Oan-Mir-1421-P26 Oan-Mir-1421-P27 Oan-Mir-1421-P28 Oan-Mir-1421-P29a Oan-Mir-1421-P29b Oan-Mir-1421-P30 Oan-Mir-1421-P31a Oan-Mir-1421-P31b Oan-Mir-1421-P31c Oan-Mir-1421-P32 Oan-Mir-1421-P33 Oan-Mir-1421-P34 Oan-Mir-1421-P35 Oan-Mir-1421-P36a Oan-Mir-1421-P36b Oan-Mir-1421-P37 Oan-Mir-1421-P39 Oan-Mir-1421-P40 Oan-Mir-1421-P41 Oan-Mir-1421-P42 Oan-Mir-1421-P43 Oan-Mir-1421-P44 Oan-Mir-1421-P45 Oan-Mir-1421-P46 Oan-Mir-1421-P47 Oan-Mir-1421-P48 Oan-Mir-1421-P49 Oan-Mir-1421-P50 Oan-Mir-1421-P51 Oan-Mir-1421-P52a Oan-Mir-1421-P52b Oan-Mir-1421-P53 Oan-Mir-1421-P54

Orthologues

Node of Origin (locus)

O. anatinus

Node of Origin (family)

O. anatinus

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041749.1: 96806411-96806471 [+]

Clustered miRNAs
(< 50kb from Mir-1421-P38)

Mir-1421-P22 NC_041749.1: 96790662-96790722 [+]
Mir-1421-P23 NC_041749.1: 96791221-96791281 [+]
Mir-1421-P24 NC_041749.1: 96791800-96791860 [+]
Mir-1421-P25 NC_041749.1: 96794548-96794608 [+]
Mir-1421-P26 NC_041749.1: 96795273-96795333 [+]
Mir-1421-P27 NC_041749.1: 96795832-96795892 [+]
Mir-1421-P28 NC_041749.1: 96796646-96796706 [+]
Mir-1421-P29a NC_041749.1: 96797344-96797411 [+]
Mir-1421-P30 NC_041749.1: 96798506-96798563 [+]
Mir-1421-P31b NC_041749.1: 96799320-96799380 [+]
Mir-1421-P32 NC_041749.1: 96799874-96799934 [+]
Mir-1421-P33 NC_041749.1: 96800689-96800749 [+]
Mir-1421-P29b NC_041749.1: 96801390-96801450 [+]
Mir-1421-P31a NC_041749.1: 96802450-96802510 [+]
Mir-1421-P34 NC_041749.1: 96803000-96803054 [+]
Mir-1421-P35 NC_041749.1: 96803731-96803791 [+]
Mir-1421-P36b NC_041749.1: 96804289-96804349 [+]
Mir-1421-P37 NC_041749.1: 96805105-96805165 [+]
Mir-1421-P38 NC_041749.1: 96806411-96806471 [+]
Mir-1421-P39 NC_041749.1: 96808270-96808331 [+]
Mir-1419-P7 NC_041749.1: 96808674-96808732 [+]
Mir-1421-P40 NC_041749.1: 96810304-96810363 [+]
Mir-1421-P36a NC_041749.1: 96810861-96810921 [+]
Mir-1421-P41 NC_041749.1: 96811675-96811735 [+]
Mir-1421-P42 NC_041749.1: 96812547-96812607 [+]
Mir-1421-P43 NC_041749.1: 96816733-96816787 [+]
Mir-1421-P31c NC_041749.1: 96816957-96817017 [+]
Mir-1421-P44 NC_041749.1: 96819518-96819575 [+]
Mir-1421-P45 NC_041749.1: 96820252-96820312 [+]
Mir-1419-P8 NC_041749.1: 96820654-96820712 [+]
Mir-1421-P46 NC_041749.1: 96821372-96821432 [+]
Mir-1421-P47 NC_041749.1: 96822447-96822507 [+]
Mir-1421-P48 NC_041749.1: 96822927-96822987 [+]
Mir-1421-P49 NC_041749.1: 96823569-96823625 [+]
Mir-1419-P9 NC_041749.1: 96823966-96824024 [+]
Mir-1421-P50 NC_041749.1: 96824715-96824775 [+]
Mir-1421-P51 NC_041749.1: 96826285-96826341 [+]
Mir-1421-P52b NC_041749.1: 96827002-96827062 [+]
Novel-4-P1b NC_041749.1: 96827349-96827406 [+]
Mir-1421-P53 NC_041749.1: 96828984-96829044 [+]
Mir-1421-P54 NC_041749.1: 96830817-96830877 [+]
Mir-1421-P20 NC_041749.1: 96831372-96831433 [+]
Mir-1421-P52a NC_041749.1: 96833979-96834039 [+]
Novel-4-P1a NC_041749.1: 96834326-96834383 [+]
Mir-1421-P1 NC_041749.1: 96837949-96838010 [+]
Mir-1421-P2 NC_041749.1: 96840218-96840278 [+]
Mir-1421-P3 NC_041749.1: 96840770-96840830 [+]
Mir-1419-P1 NC_041749.1: 96841505-96841558 [+]
Mir-1421-P4 NC_041749.1: 96842948-96843008 [+]
Mir-1421-P5 NC_041749.1: 96844194-96844254 [+]
Mir-1421-P6 NC_041749.1: 96844751-96844811 [+]
Mir-1421-P7a NC_041749.1: 96847250-96847310 [+]
Mir-1421-P8 NC_041749.1: 96847806-96847866 [+]
Mir-1421-P9 NC_041749.1: 96850234-96850294 [+]
Mir-1419-P2c NC_041749.1: 96853761-96853819 [+]
Mir-1421-P7b NC_041749.1: 96855059-96855119 [+]
Mir-1421-P10 NC_041749.1: 96855616-96855676 [+]

Seed

GGUGGUC

Precursor
(pre-Mir +30nt flank)

AGGAUUCCAGCUGAUCUACCACAUGGUGUGAGGUGGUCACAUGAGUUGCAGUGCGAUAUGGGAAUAUGCUGCAUCCCGUGUGACCUCCCUACACGGUGCUGUGUCUCUCCGUCUGGAGAUG

Get precursor sequence

Structure

        10          20        30        40        50          
AGGAUUCCAGCUGAUCU--| CA   G     A  U         AGU      GCGAUAU 
                   AC  CAU GUGUG GG GGUCACAUG   UGCAGU       \
                   UG  GUG CACAU CC CCAGUGUGC   ACGUCG       G
GUAGAGGUCUGCCUCUCUG^ UC   G     C  U         CCU      UAUAAGG 
 .       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-1421-P38_5p

mirBase accession

MIMAT0007074

Sequence

0- AGGUGGUCACAUGAGUUGCAGU -22

Get sequence

Star sequence

Oan-Mir-1421-P38_3p*

mirBase accession

MIMAT0007075

Sequence

39- UGCAUCCCGUGUGACCUCCCUA -61

Get sequence