Mir-1421-P17

MirGeneDB ID

Oan-Mir-1421-P17

Family name

MIR-1421 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-1421z

Paralogues

Oan-Mir-1421-P1 Oan-Mir-1421-P2 Oan-Mir-1421-P3 Oan-Mir-1421-P4 Oan-Mir-1421-P5 Oan-Mir-1421-P6 Oan-Mir-1421-P7a Oan-Mir-1421-P7b Oan-Mir-1421-P7c Oan-Mir-1421-P8 Oan-Mir-1421-P9 Oan-Mir-1421-P10 Oan-Mir-1421-P11 Oan-Mir-1421-P12 Oan-Mir-1421-P13a Oan-Mir-1421-P13b Oan-Mir-1421-P14 Oan-Mir-1421-P15 Oan-Mir-1421-P16 Oan-Mir-1421-P18 Oan-Mir-1421-P19 Oan-Mir-1421-P20 Oan-Mir-1421-P21 Oan-Mir-1421-P22 Oan-Mir-1421-P23 Oan-Mir-1421-P24 Oan-Mir-1421-P25 Oan-Mir-1421-P26 Oan-Mir-1421-P27 Oan-Mir-1421-P28 Oan-Mir-1421-P29a Oan-Mir-1421-P29b Oan-Mir-1421-P30 Oan-Mir-1421-P31a Oan-Mir-1421-P31b Oan-Mir-1421-P31c Oan-Mir-1421-P32 Oan-Mir-1421-P33 Oan-Mir-1421-P34 Oan-Mir-1421-P35 Oan-Mir-1421-P36a Oan-Mir-1421-P36b Oan-Mir-1421-P37 Oan-Mir-1421-P38 Oan-Mir-1421-P39 Oan-Mir-1421-P40 Oan-Mir-1421-P41 Oan-Mir-1421-P42 Oan-Mir-1421-P43 Oan-Mir-1421-P44 Oan-Mir-1421-P45 Oan-Mir-1421-P46 Oan-Mir-1421-P47 Oan-Mir-1421-P48 Oan-Mir-1421-P49 Oan-Mir-1421-P50 Oan-Mir-1421-P51 Oan-Mir-1421-P52a Oan-Mir-1421-P52b Oan-Mir-1421-P53 Oan-Mir-1421-P54

Orthologues

Node of Origin (locus)

O. anatinus

Node of Origin (family)

O. anatinus

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041749.1: 96868684-96868744 [+]

Clustered miRNAs
(< 50kb from Mir-1421-P17)

Mir-1421-P44 NC_041749.1: 96819518-96819575 [+]
Mir-1421-P45 NC_041749.1: 96820252-96820312 [+]
Mir-1419-P8 NC_041749.1: 96820654-96820712 [+]
Mir-1421-P46 NC_041749.1: 96821372-96821432 [+]
Mir-1421-P47 NC_041749.1: 96822447-96822507 [+]
Mir-1421-P48 NC_041749.1: 96822927-96822987 [+]
Mir-1421-P49 NC_041749.1: 96823569-96823625 [+]
Mir-1419-P9 NC_041749.1: 96823966-96824024 [+]
Mir-1421-P50 NC_041749.1: 96824715-96824775 [+]
Mir-1421-P51 NC_041749.1: 96826285-96826341 [+]
Mir-1421-P52b NC_041749.1: 96827002-96827062 [+]
Novel-4-P1b NC_041749.1: 96827349-96827406 [+]
Mir-1421-P53 NC_041749.1: 96828984-96829044 [+]
Mir-1421-P54 NC_041749.1: 96830817-96830877 [+]
Mir-1421-P20 NC_041749.1: 96831372-96831433 [+]
Mir-1421-P52a NC_041749.1: 96833979-96834039 [+]
Novel-4-P1a NC_041749.1: 96834326-96834383 [+]
Mir-1421-P1 NC_041749.1: 96837949-96838010 [+]
Mir-1421-P2 NC_041749.1: 96840218-96840278 [+]
Mir-1421-P3 NC_041749.1: 96840770-96840830 [+]
Mir-1419-P1 NC_041749.1: 96841505-96841558 [+]
Mir-1421-P4 NC_041749.1: 96842948-96843008 [+]
Mir-1421-P5 NC_041749.1: 96844194-96844254 [+]
Mir-1421-P6 NC_041749.1: 96844751-96844811 [+]
Mir-1421-P7a NC_041749.1: 96847250-96847310 [+]
Mir-1421-P8 NC_041749.1: 96847806-96847866 [+]
Mir-1421-P9 NC_041749.1: 96850234-96850294 [+]
Mir-1419-P2c NC_041749.1: 96853761-96853819 [+]
Mir-1421-P7b NC_041749.1: 96855059-96855119 [+]
Mir-1421-P10 NC_041749.1: 96855616-96855676 [+]
Mir-1421-P11 NC_041749.1: 96856623-96856683 [+]
Mir-1421-P12 NC_041749.1: 96857179-96857236 [+]
Mir-1421-P13a NC_041749.1: 96860142-96860202 [+]
Mir-1419-P3 NC_041749.1: 96860539-96860600 [+]
Mir-1419-P2b NC_041749.1: 96861885-96861943 [+]
Mir-1421-P14 NC_041749.1: 96862608-96862668 [+]
Mir-1421-P7c NC_041749.1: 96863179-96863242 [+]
Mir-1421-P15 NC_041749.1: 96863738-96863798 [+]
Mir-1421-P13b NC_041749.1: 96864853-96864913 [+]
Mir-1421-P16 NC_041749.1: 96866978-96867038 [+]
Mir-1419-P2a NC_041749.1: 96867655-96867713 [+]
Mir-1421-P17 NC_041749.1: 96868684-96868744 [+]
Mir-1419-P4 NC_041749.1: 96871320-96871378 [+]
Mir-1421-P18 NC_041749.1: 96872639-96872699 [+]
Mir-1421-P19 NC_041749.1: 96873176-96873236 [+]
Mir-1419-P5 NC_041749.1: 96873874-96873932 [+]
Mir-1421-P21 NC_041749.1: 96875181-96875241 [+]
Mir-1419-P6 NC_041749.1: 96875584-96875642 [+]

Seed

GCAGGUC

Precursor
(pre-Mir +30nt flank)

AGGAUCCUGGCUGACUUACGGCAUGGUGUGAGCAGGUCACGUGUGGUGCAGCGUGAUAGUGGAAUAUGCUGCAUCGCGUGUGACCUCCCUACACCGCACUUCGUCUCUCCUACUGGAGAUU

Get precursor sequence

Structure

        10        20            30        40        50          
AGGAUCCUGGCUGACUUACG----| AU      AGC                   GUGAUAG 
                        GC  GGUGUG   AGGUCACGUGUGGUGCAGC       \
                        CG  CCACAU   UCCAGUGUGCGCUACGUCG       U
UUAGAGGUCAUCCUCUCUGCUUCA^ --      CCC                   UAUAAGG 
 .       110       100          90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-1421-P17_5p

mirBase accession

MIMAT0007245

Sequence

0- AGCAGGUCACGUGUGGUGCAGC -22

Get sequence

Star sequence

Oan-Mir-1421-P17_3p*

mirBase accession

MIMAT0007246

Sequence

39- UGCAUCGCGUGUGACCUCCCUA -61

Get sequence