Mir-506-P22

MirGeneDB ID

Mmu-Mir-506-P22

Family name

MIR-506 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-742

Paralogues

Mmu-Mir-506-P2b Mmu-Mir-506-P4 Mmu-Mir-506-P11a Mmu-Mir-506-P11b1 Mmu-Mir-506-P11b2 Mmu-Mir-506-P11c1 Mmu-Mir-506-P11c2 Mmu-Mir-506-P11d Mmu-Mir-506-P12 Mmu-Mir-506-P13 Mmu-Mir-506-P14 Mmu-Mir-506-P15 Mmu-Mir-506-P16 Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P23 Mmu-Mir-506-P24

Orthologues

Laf-Mir-506 Rno-Mir-506-P22

Node of Origin (locus)

Muridae

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66780376-66780432 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P22)

Mir-506-P24 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P23 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P22 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P21 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P20 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P19 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P17 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P16 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P15 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P14 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P13 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P12 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P11d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P11c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P11b2 chrX: 66829212-66829270 [-] UCSC Ensembl

Seed

AAAGCCA

Precursor
(pre-Mir +30nt flank)

GGCUGGUUCUAGAGUACCUGGGCAGUGCUCUACUCACAUGGUUGCUAAUCACGUGAAGUGUAGGUGAAAGCCACCAUGCUGGGUAAAGUAAAGCUCAUCAUGUUCUUCAUUUGUUGU

Get precursor sequence

Structure

        10          20        30         40        50        
GGCUGGUUCUAGAGUACC--     AG    C      -|     U   AA    GUGAA 
                    UGGGC  UGCU UACUCA CAUGGU GCU  UCAC     \
                    ACUCG  AUGA AUGGGU GUACCA CGA  AGUG     G
UGUUGUUUACUUCUUGUACU     AA    A      C^     C   A-    GAUGU 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-506-P22_5p*

mirBase accession

MIMAT0004838

Sequence

0- UACUCACAUGGUUGCUAAUCAC -22

Get sequence

Proposed targets

microrna.org: MIMAT0004838
TargetScanVert: mmu-miR-742-5p
miRDB: MIMAT0004838

Mature sequence

Mmu-Mir-506-P22_3p

mirBase accession

MIMAT0004237

Sequence

35- GAAAGCCACCAUGCUGGGUAAA -57

Get sequence

Proposed targets

microrna.org: MIMAT0004237
TargetScanVert: mmu-miR-742-3p
miRDB: MIMAT0004237