Mir-506-P16

MirGeneDB ID

Mmu-Mir-506-P16

Family name

MIR-506 (all species)

Seed

UCUUGGA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-470

Paralogues

Mmu-Mir-506-P1 Mmu-Mir-506-P2 Mmu-Mir-506-P7 Mmu-Mir-506-P14 Mmu-Mir-506-P15a Mmu-Mir-506-P15b1 Mmu-Mir-506-P15b2 Mmu-Mir-506-P15c1 Mmu-Mir-506-P15c2 Mmu-Mir-506-P15d Mmu-Mir-506-P17 Mmu-Mir-506-P18 Mmu-Mir-506-P19 Mmu-Mir-506-P20 Mmu-Mir-506-P21 Mmu-Mir-506-P22 Mmu-Mir-506-P23 Mmu-Mir-506-P24 Mmu-Mir-506-P25 Mmu-Mir-506-P26 Mmu-Mir-506-P27

Orthologues

Node of Origin (locus)

M. musculus

Node of Origin (family)

Eutheria

Genome context
(mm10)

chrX: 66813961-66814017 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-506-P16)

Mir-506-P20 chrX: 66776760-66776815 [-] UCSC Ensembl
Mir-506-P21 chrX: 66777266-66777322 [-] UCSC Ensembl
Mir-506-P19 chrX: 66780376-66780432 [-] UCSC Ensembl
Mir-506-P26 chrX: 66780767-66780824 [-] UCSC Ensembl
Mir-506-P27 chrX: 66789899-66789957 [-] UCSC Ensembl
Mir-506-P17 chrX: 66792598-66792655 [-] UCSC Ensembl
Mir-506-P18 chrX: 66796809-66796869 [-] UCSC Ensembl
Mir-506-P14 chrX: 66799235-66799294 [-] UCSC Ensembl
Mir-506-P24 chrX: 66800540-66800597 [-] UCSC Ensembl
Mir-506-P23 chrX: 66801518-66801575 [-] UCSC Ensembl
Mir-506-P25 chrX: 66801954-66802011 [-] UCSC Ensembl
Mir-506-P22 chrX: 66810438-66810494 [-] UCSC Ensembl
Mir-506-P16 chrX: 66813961-66814017 [-] UCSC Ensembl
Mir-506-P15d chrX: 66822655-66822713 [-] UCSC Ensembl
Mir-506-P15c2 chrX: 66825965-66826025 [-] UCSC Ensembl
Mir-506-P15b2 chrX: 66829212-66829270 [-] UCSC Ensembl
Mir-506-P15c1 chrX: 66832527-66832587 [-] UCSC Ensembl
Mir-506-P15b1 chrX: 66835774-66835832 [-] UCSC Ensembl
Mir-506-P15a chrX: 66839063-66839121 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUAUAUUGAAGCUGUGGUGUGCAGUGCUCUUCUUGGACUGGCACUGGUGAGUUAAACUAAAUACAACCAGUACCUUUCUGAGAAGAGUAAAGCUCAUCACAUUCUUUUGAUGAGGC

Get precursor sequence

Structure

        10          20        30        40        50        
UCUAUAUUGAAGCUGUG--|  U  AG         UG  CU  C      GA  UAAA 
                   GUG GC  UGCUCUUCU  GA  GG ACUGGU  GU    C
                   UAC CG  AUGAGAAGA  CU  CC UGACCA  CA    U
CGGAGUAGUUUUCUUACAC^  U  AA         GU  UU  A      A-  UAAA 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Mature sequence

Mmu-Mir-506-P16_5p

mirBase accession

MIMAT0002111

Sequence

0- UUCUUGGACUGGCACUGGUGAGU -23

Get sequence

Proposed targets

microrna.org: MIMAT0002111
TargetScanVert: mmu-miR-470-5p
miRDB: MIMAT0002111

Star sequence

Mmu-Mir-506-P16_3p*

mirBase accession

MIMAT0004760

Sequence

35- AACCAGUACCUUUCUGAGAAGA -57

Get sequence

Proposed targets

microrna.org: MIMAT0004760
TargetScanVert: mmu-miR-470-3p
miRDB: MIMAT0004760