MirGeneDB ID | Mml-Mir-320-P1 |
Family name |
MIR-320 (all species) |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-mir-320a
|
Paralogues |
Mml-Mir-320-P2a
Mml-Mir-320-P2b
Mml-Mir-320-P3
Mml-Mir-320-P4
|
Orthologues |
Bta-Mir-320-P1c
Bta-Mir-320-P1d
Cfa-Mir-320
Cja-Mir-320-P1
Cpo-Mir-320
Dno-Mir-320
Eca-Mir-320
Ete-Mir-320
Hsa-Mir-320-P1
Laf-Mir-320
Mmr-Mir-320-P1a
Mmr-Mir-320-P1b
Mmr-Mir-320-P1c
Mmr-Mir-320-P1d
Mmu-Mir-320
Ocu-Mir-320
Pab-Mir-320-P1
Rno-Mir-320
|
Node of Origin (locus) |
Primates
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_003339765.3_Mmul_10_traces) |
CM014343.1: 22409333-22409386 [-]
UCSC
Ensembl
|
Seed |
AAAGCUG |
Precursor (pre-Mir +30nt flank) |
UAUUUAUCAGGCGGCGCUUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAUGAGGGAACCGGUCUGGGCUACG
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUUAUCAGGCGGCGC--| C CCUC- UU C CGG
UUCG UCC CGCCUUCUC CCCGGUU UUCC A
GAGU AGG GCGGGAGAG GGGUCGA AAGG G
GCAUCGGGUCUGGCCAAGG^ - AAAAA UU A GCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Star sequence |
Mml-Mir-320-P1_5p* |
mirBase accession | None |
Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
Mature sequence |
Mml-Mir-320-P1_3p |
mirBase accession | MIMAT0006263 |
Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-320a
|