MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-320-P1

Family name MIR-320 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-320-P1c  Bta-Mir-320-P1d  Cfa-Mir-320  Cpo-Mir-320  Dno-Mir-320  Eca-Mir-320  Ete-Mir-320  Hsa-Mir-320-P1  Laf-Mir-320  Mml-Mir-320-P1  Mmr-Mir-320-P1a  Mmr-Mir-320-P1b  Mmr-Mir-320-P1c  Mmr-Mir-320-P1d  Mmu-Mir-320  Ocu-Mir-320  Pab-Mir-320-P1  Rno-Mir-320 
Node of Origin (locus) Catarrhini
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021927.1: 16121062-16121115 [+] UCSC Ensembl
Seed AAAGCUG
Precursor
(pre-Mir +30nt flank)		 
UAUUUAUUAGGCGGCGCUUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGAAUAAGGGGAUGGUUCUGGGCUACG
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Structure
        10        20          30        40        50      
UAUUUAUUAGGCGGCGCUUCGCUCCCCUC--|        UU       C    CGG 
                               CGCCUUCUC  CCCGGUU UUCC   A
                               GCGGGAGAG  GGGUCGA AAGG   G
GCAUCGGGUCUUGGUAGGGGAAUAAGAAAAA^        UU       A    GCU 
  110       100        90        80        70        60
Deep sequencing
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CommentAs a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced.
3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Cja-Mir-320-P1_5p* (predicted)
mirBase accessionNone
Sequence 
0- GCCUUCUCUUCCCGGUUCUUCC -22
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Mature sequence

Cja-Mir-320-P1_3p
mirBase accessionNone
Sequence 
32- AAAAGCUGGGUUGAGAGGGCGA -54
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