MirGeneDB 2.1

MirGeneDB ID

Mml-Mir-154-P28b

Family name MIR-154 (all species)
Seed GAGGAUA
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-1185-2
Paralogues Mml-Mir-154-P1  Mml-Mir-154-P2-v1  Mml-Mir-154-P2-v2  Mml-Mir-154-P3a-v1  Mml-Mir-154-P3a-v2  Mml-Mir-154-P3b  Mml-Mir-154-P4a  Mml-Mir-154-P4b  Mml-Mir-154-P5  Mml-Mir-154-P6  Mml-Mir-154-P7  Mml-Mir-154-P8  Mml-Mir-154-P9  Mml-Mir-154-P10  Mml-Mir-154-P12  Mml-Mir-154-P13  Mml-Mir-154-P14  Mml-Mir-154-P15  Mml-Mir-154-P17  Mml-Mir-154-P18  Mml-Mir-154-P19  Mml-Mir-154-P20-v1  Mml-Mir-154-P20-v2  Mml-Mir-154-P21  Mml-Mir-154-P22  Mml-Mir-154-P23  Mml-Mir-154-P24  Mml-Mir-154-P25  Mml-Mir-154-P26  Mml-Mir-154-P27  Mml-Mir-154-P28a  Mml-Mir-154-P29  Mml-Mir-154-P30  Mml-Mir-154-P31  Mml-Mir-154-P36 
Orthologues Bta-Mir-154-P28  Cfa-Mir-154-P28  Cpo-Mir-154-P28  Ete-Mir-154-P28  Hsa-Mir-154-P28b 
Node of Origin (locus) Catarrhini
Node of Origin (family) Eutheria
Genome context
(rheMac8_trace)
chr7: 163376994-163377053 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P28b)
Mir-154-P7 chr7: 163357375-163357433 [+] UCSC Ensembl
Mir-154-P13 chr7: 163358644-163358699 [+] UCSC Ensembl
Mir-154-P2-v1 chr7: 163359100-163359154 [+] UCSC Ensembl
Mir-154-P2-v2 chr7: 163359101-163359153 [+] UCSC Ensembl
Mir-154-P8 chr7: 163360321-163360377 [+] UCSC Ensembl
Mir-154-P3a-v1 chr7: 163361049-163361104 [+] UCSC Ensembl
Mir-154-P3a-v2 chr7: 163361049-163361104 [+] UCSC Ensembl
Mir-154-P26 chr7: 163361342-163361399 [+] UCSC Ensembl
Mir-154-P4a chr7: 163362105-163362162 [+] UCSC Ensembl
Mir-154-P4b chr7: 163362422-163362480 [+] UCSC Ensembl
Mir-154-P18 chr7: 163364085-163364140 [+] UCSC Ensembl
Mir-154-P22 chr7: 163366429-163366486 [+] UCSC Ensembl
Mir-154-P19 chr7: 163368279-163368336 [+] UCSC Ensembl
Mir-376-P4 chr7: 163373702-163373759 [+] UCSC Ensembl
Mir-376-P3 chr7: 163374087-163374144 [+] UCSC Ensembl
Mir-154-P23 chr7: 163374240-163374295 [+] UCSC Ensembl
Mir-376-P2 chr7: 163374466-163374523 [+] UCSC Ensembl
Mir-376-P1 chr7: 163374794-163374851 [+] UCSC Ensembl
Mir-154-P28b chr7: 163376994-163377053 [+] UCSC Ensembl
Mir-154-P28a chr7: 163378214-163378273 [+] UCSC Ensembl
Mir-154-P9 chr7: 163379932-163379994 [+] UCSC Ensembl
Mir-154-P17 chr7: 163380474-163380531 [+] UCSC Ensembl
Mir-154-P21 chr7: 163381324-163381387 [+] UCSC Ensembl
Mir-154-P27 chr7: 163381903-163381961 [+] UCSC Ensembl
Mir-544 chr7: 163382670-163382726 [+] UCSC Ensembl
Mir-154-P10 chr7: 163388330-163388387 [+] UCSC Ensembl
Mir-134 chr7: 163388708-163388768 [+] UCSC Ensembl
Mir-154-P15 chr7: 163389442-163389500 [+] UCSC Ensembl
Mir-154-P3b chr7: 163390241-163390297 [+] UCSC Ensembl
Mir-154-P1 chr7: 163393764-163393821 [+] UCSC Ensembl
Mir-154-P20-v2 chr7: 163394623-163394678 [+] UCSC Ensembl
Mir-154-P20-v1 chr7: 163394623-163394678 [+] UCSC Ensembl
Mir-154-P6 chr7: 163395856-163395915 [+] UCSC Ensembl
Mir-541 chr7: 163398297-163398362 [+] UCSC Ensembl
Mir-154-P36 chr7: 163399110-163399163 [+] UCSC Ensembl
Mir-154-P14 chr7: 163399261-163399315 [+] UCSC Ensembl
Mir-154-P5 chr7: 163399401-163399456 [+] UCSC Ensembl
Mir-154-P12 chr7: 163399719-163399775 [+] UCSC Ensembl
Mir-154-P25 chr7: 163400526-163400581 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCUUCGAGCCACUCUUUGGUACUUGAAGAGAGGAUACCCUUUGUAUGUUCACUUGAUUAAUGGUGAAUAUACAGGGGGAGACUCUUAUUUGCGUAUCAAACUCUGUCGGGGAAGGCGC
Get precursor sequence
Structure
        10          20         30        40        50         
GCUCUUCGAGCCACUCU--       U    -|    GAUA              ACUUGA 
                   UUGGUAC UGAA GAGAG    CCCUUUGUAUGUUC      U
                   AACUAUG GUUU UUCUC    GGGGGACAUAUAAG      U
CGCGGAAGGGGCUGUCUCA       C    A^    AGA-              UGGUAA 
.       110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-154-P28b_5p

mirBase accessionMIMAT0024314
Sequence
0- AGAGGAUACCCUUUGUAUGUUC -22
Get sequence
Proposed targets TargetScanVert: mml-miR-1185-5p
Co-mature sequence

Mml-Mir-154-P28b_3p

mirBase accessionMIMAT0027107
Sequence
38- AUAUACAGGGGGAGACUCUUAU -60
Get sequence
Proposed targets TargetScanVert: mml-miR-1185-3p