MirGeneDB ID | Mml-Mir-1180 |
Family name |
MIR-1180 (all species) |
Seed |
UUCCGGC |
Species |
Rhesus monkey (Macaca mulatta) |
MiRBase ID |
mml-mir-1180
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Paralogues |
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Orthologues |
Hsa-Mir-1180
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Node of Origin (locus) |
Catarrhini
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Node of Origin (family) |
Catarrhini
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Genome context (rheMac8_trace) |
chr16: 19142309-19142364 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AGUCCCGGCGGGGCGAAGCCCGCGGCUGCCGGACCCACCCGGCCGGGAAUAGUGCUCCUGGUUGUUUCCGGCUCGCGUGGGUGUGUCGGCGGCGGGGCCUGACACCCCCGGCCUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUCCCGGCGGGGCGAAG-- G C G C -| GUGCU
CCCGC GCUG CG ACCCAC CG GCCGGGAAUA \
GGGCG CGGC GU UGGGUG GC CGGCCUUUGU C
CCUCCGGCCCCCACAGUCCG G U G C U^ UGGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
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Star sequence |
Mml-Mir-1180_5p* |
mirBase accession | MIMAT0028264 |
Sequence |
0- GGACCCACCCGGCCGGGAAUA -21
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-1180-5p
|
Mature sequence |
Mml-Mir-1180_3p |
mirBase accession | MIMAT0028265 |
Sequence |
34- UUUCCGGCUCGCGUGGGUGUGU -56
Get sequence
|
Proposed targets |
TargetScanVert: mml-miR-1180-3p
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