| MirGeneDB ID | Eca-Mir-1180 |
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| Family name |
MIR-1180 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
eca-mir-1180
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| Paralogues |
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| Orthologues |
Cja-Mir-1180
Hsa-Mir-1180
Mml-Mir-1180
Mmr-Mir-1180
Pab-Mir-1180
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| Node of Origin (locus) |
Boreoeutheria
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| Node of Origin (family) |
Boreoeutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009158.1: 59580512-59580567 [+]
UCSC
Ensembl
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| Seed |
UUCCGGC |
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Precursor
(pre-Mir +30nt flank) |
GGUGGCUCUGGGACAAAGCCCGUGUCUGCCUGGCCCACCCAGCCGGGAAUAGUGCACGAGUUUGUUUCCGGCUCGAGUGGGUGUGUCGGAGGCGAGGCUGCUGCUCCCGAAGGAGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGUGGCUCUGGGACAAA- - G CCUG CC-| GUGCA
GCC CGU UCUG GCCCAC AGCCGGGAAUA \
CGG GCG AGGC UGGGUG UCGGCCUUUGU C
CGAGGAAGCCCUCGUCGU A G UGUG AGC^ UUGAG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Star sequence |
Eca-Mir-1180_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGGCCCACCCAGCCGGGAAUA -21
Get sequence
|
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| Mature sequence |
Eca-Mir-1180_3p |
| mirBase accession | MIMAT0013020 |
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| Sequence |
34- UUUCCGGCUCGAGUGGGUGUGU -56
Get sequence
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