MirGeneDB 3.0
MirGeneDB ID

Mgi-Mir-1984-P2

Family name MIR-1984 (all species)
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-1984-P1 
Orthologues Esc-Mir-1984  Hru-Mir-1984-P2  Lgi-Mir-1984-P2  Lhy-Mir-1984  Npo-Mir-1984  Pve-Mir-1984-P2  Rph-Mir-1984-P2 
Node of Origin (locus) Gastropoda + Bivalvia + Scaphopoda
Node of Origin (family) Conchifera
Genome context
(CGI_GCA_000297895.1)		 scaffold339: 60097-60155 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1984-P2)		 Mir-1984-P1 scaffold339: 59463-59521 [+] Ensembl
Mir-1984-P2 scaffold339: 60097-60155 [+] Ensembl
Seed GCCAUUU
Precursor
(pre-Mir +30nt flank)		 
CUUGCCGAUCUUGGAAAGGGUAGAUCGUCCUGCCAUUUUUAUCAGUCACUGUGUGUUUAGAAAAUCGCAGGACAGAUAUGAAUGGCAUAAUAGACUACCGACAGCUGCCAAUAGAAAAA
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Structure
        10          20        30         40        50         
CUUGCCGAUCUUGGAAAG--|    A  GUCC-        U    A   A     UGUUU 
                    GGUAG UC     UGCCAUUU UAUC GUC CUGUG     A
                    CCAUC AG     ACGGUAAG AUAG CAG GACGC     G
AAAAAGAUAACCGUCGACAG^    -  AUAAU        U    A   -     UAAAA 
       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Mature sequence

Mgi-Mir-1984-P2_5p
mirBase accessionNone
Sequence 
0- UGCCAUUUUUAUCAGUCACUGUG -23
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Star sequence

Mgi-Mir-1984-P2_3p*
mirBase accessionNone
Sequence 
37- CAGGACAGAUAUGAAUGGCAUA -59
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