| MirGeneDB ID | Lch-Mir-150 |
|---|---|
| Family name | MIR-150 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-150 Ami-Mir-150 Bta-Mir-150 Cfa-Mir-150 Cja-Mir-150 Cmi-Mir-150 Cpo-Mir-150 Dno-Mir-150 Dre-Mir-150 Eca-Mir-150 Ete-Mir-150 Gja-Mir-150 Gmo-Mir-150 Hsa-Mir-150 Laf-Mir-150 Loc-Mir-150 Mal-Mir-150 Mdo-Mir-150 Mml-Mir-150 Mmr-Mir-150 Mmu-Mir-150 Mun-Mir-150 Neu-Mir-150 Oan-Mir-150 Ocu-Mir-150 Pab-Mir-150 Pbv-Mir-150 Rno-Mir-150 Sha-Mir-150 Spt-Mir-150 Sto-Mir-150 Tni-Mir-150 Xla-Mir-150-P1 Xla-Mir-150-P2 Xtr-Mir-150 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (LatCha1_add) |
JH126644.1: 1630374-1630432 [-] Ensembl |
| Seed | CUCCCAA |
| Precursor (pre-Mir +30nt flank) |
UUUCCCCUGUCACAAGGACGGAGUUCUCUGUCUCCCAACCCUUGUACCAGUGUGAGAUUAGAGAACACUGGUACGGAGGAGGGGGGAGAGAGAGCGCUCUCGGACAAGCCAACCCCGAUGet precursor sequence |
| Structure | 10 20 30 40 50 UUUCCCCUGUCACAAGGAC U G AA ----| GAGAU GGAGU CUCU UCUCCC CCCUU GUACCAGUGU \ UCUCG GAGA AGAGGG GGGAG CAUGGUCACA U UAGCCCCAACCGAACAGGC C G -- GAGG^ AGAGA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-150_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UCUCCCAACCCUUGUACCAGUGU -23
Get sequence
|
| Star sequence | Lch-Mir-150_3p* (predicted) |
| mirBase accession | None |
| Sequence |
36- ACUGGUACGGAGGAGGGGGGAGA -59
Get sequence
|
