| MirGeneDB ID | Efe-Mir-1996-P3 |
|---|
| Family name |
MIR-1996 (all species) |
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| Seed |
UCAAGUG |
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| Species |
Common brandling worm (Eisenia fetida) |
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| MiRBase ID |
|
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| Paralogues |
Efe-Mir-1996-P1
Efe-Mir-1996-P2
|
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| Orthologues |
Cte-Mir-1996
|
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| Node of Origin (locus) |
E. fetida
|
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| Node of Origin (family) |
Annelida
|
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Genome context
(Efe_combined) |
Efet.01.53477: 425-491 [-]
|
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Precursor
(pre-Mir +30nt flank) |
GAAAGGGAAGAGUGGAAGCCGAUUAGCAGUUUCAAGUGAGGUCAGAGCUGCUGUGGAUUAAUGUCAUCAGUUCAGCCGCUCUUGUCGCGCUUGACACUGUCAGUUUCAUGGCUCUUACAACGACCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAAGGGAAGAGUGGAAGCC--| AG U A UC U GUGGAUUAAU
GAUU CAGU UCAAGUG GG AGAGC GCU \
UUGA GUCA AGUUCGC CU UCUCG CGA G
CGCCAGCAACAUUCUCGGUACU^ CU C G GU C CUUGACUACU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Efe-Mir-1996-P3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCAAGUGAGGUCAGAGCUGCU -22
Get sequence
|
|---|
| Star sequence |
Efe-Mir-1996-P3_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- CCGCUCUUGUCGCGCUUGACAC -67
Get sequence
|
|---|
