| MirGeneDB ID | Eca-Mir-1277 |
|---|
| Family name |
MIR-1277 (all species) |
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| Species |
Horse (Equus caballus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Bta-Mir-1277
Cfa-Mir-1277
Cpo-Mir-1277
Dno-Mir-1277
Hsa-Mir-1277
Laf-Mir-1277
Mml-Mir-1277
Mmr-Mir-1277
Ocu-Mir-1277
Pab-Mir-1277
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
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Genome context
(GCA_002863925.1_EquCab3.0) |
CM009179.1: 97744099-97744156 [+]
UCSC
Ensembl
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| Seed |
AUAUAUA |
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Precursor
(pre-Mir +30nt flank) |
AUCCAUUUCUACCUUCUCUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUUUCAUCUGUUACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCCAUUUCUACCUUCUCU--| UC U G UGUAU
AACC CCAAA AUAUAUAUAUAU UACGUAUG A
UUGG GGUUU UAUGUAUAUAUA AUGCAUAU U
GUCAUUGUCUACUUUUUUAAU^ GU U G GUAAG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
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| Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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| Mature sequence |
Eca-Mir-1277_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAUAUAUAUAUAUGUACGUAUG -22
Get sequence
|
|---|
| Star sequence |
Eca-Mir-1277_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- UACGUAGAUAUAUAUGUAUUUU -58
Get sequence
|
|---|
