MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-1277

Family name MIR-1277 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-1277
Paralogues
Orthologues Cfa-Mir-1277  Cpo-Mir-1277  Dno-Mir-1277  Eca-Mir-1277  Hsa-Mir-1277  Laf-Mir-1277  Mml-Mir-1277  Mmr-Mir-1277  Ocu-Mir-1277  Pab-Mir-1277 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 2569970-2570027 [+] UCSC Ensembl
Seed AUAUAUA
Precursor
(pre-Mir +30nt flank)
AUCCAUUUCUACCUUCUUUAACCUCCCAAAUAUAUAUAUAUAUGUACGUAUGUGUAUAUGAAUGUAUACGUAGAUAUAUAUGUAUUUUUGGUGGGUUUAAUUUUCUUCAUCUGUUACU
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Structure
        10          20        30        40        50        
AUCCAUUUCUACCUUCUUU--|   UC     U            G        UGUAU 
                     AACC  CCAAA AUAUAUAUAUAU UACGUAUG     A
                     UUGG  GGUUU UAUGUAUAUAUA AUGCAUAU     U
UCAUUGUCUACUUCUUUUAAU^   GU     U            G        GUAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1277_5p

mirBase accessionNone
Sequence
0- UAUAUAUAUAUAUGUACGUAUG -22
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Star sequence

Bta-Mir-1277_3p*

mirBase accessionMIMAT0024569
Sequence
36- UACGUAGAUAUAUAUGUAUUUU -58
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Proposed targets TargetScanVert: bta-miR-1277