MirGeneDB ID | Ebu-Mir-26-P5 |
Family name |
MIR-26 (all species) |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-26-P6
Ebu-Mir-26-P7
|
Orthologues |
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Vertebrata
|
Genome context (Eburgeri_3) |
FYBX02009576.1: 1795671-1795730 [+]
UCSC
Ensembl
|
Seed |
UCAAGUA |
Precursor (pre-Mir +30nt flank) |
GACUGUUUUUCACAUCGGGCUUGGUUCUCGUUCAAGUAAUCCAGGAUAGGCUGUAUGCCUUUGCUAAGCCUGUCCUCGGUUGCUUGGACCAGAUGCAGUCCCUUAGCAGCGUGUCGGAUC
Get precursor sequence
|
Structure | 10 20 30 40 50
GACUGUUUUUCACAUCG--| C GU C C GUAUGC
GG UUG UCU GUUCAAGUAAUC AGGAUAGGCU C
CC GAC AGA CAGGUUCGUUGG UCCUGUCCGA U
CUAGGCUGUGCGACGAUUC^ U GU C C AUCGUU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ebu-Mir-26-P5_5p |
mirBase accession | None |
Sequence |
0- UUCAAGUAAUCCAGGAUAGGCU -22
Get sequence
|
Star sequence |
Ebu-Mir-26-P5_3p* |
mirBase accession | None |
Sequence |
38- CCUGUCCUCGGUUGCUUGGACC -60
Get sequence
|