| MirGeneDB ID | Ebu-Mir-203-P4 |
|---|
| Family name |
MIR-203 (all species) |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-203-P3
|
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| Orthologues |
Lch-Mir-203
Spt-Mir-203
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02009646.1: 1697054-1697113 [+]
UCSC
Ensembl
|
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| Seed |
GAAAUGU |
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Precursor
(pre-Mir +30nt flank) |
CCUUUCCACGAUUCGGUGACGACCAGACGCAGUGGUCCCGAGCAGUUCAACAGUUCUCAUGCGCAAUUGUGAAAUGUUUCGGACCACUGCAUCUGGAAAUCAAAUGGCAACAUGAAUCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCUUUCCACGAUUCGGUGACGA--| C C G A GUUCUCA
CCAGA GCAGUGGUCC GAGCA UUCA CA \
GGUCU CGUCACCAGG UUUGU AAGU GU U
AACUAAGUACAACGGUAAACUAAA^ A C A - UAACGCG
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-203-P4_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- AGUGGUCCCGAGCAGUUCAACA -22
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-203-P4_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- UGAAAUGUUUCGGACCACUGC -60
Get sequence
|
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