| MirGeneDB ID | Ebu-Mir-19-P2e |
|---|
| Family name |
MIR-19 (all species) |
|---|
| Seed |
GUGCAAA |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ebu-Mir-19-P1f
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
E. burgeri
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Eburgeri_3) |
FYBX02010694.1: 1553451-1553512 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCCUCCCAUCCUGAAAUGGUUGCGGCUGUUAGUUUUGCUGGUUUGCUUUCAGCUUUUUUAUCUGUACGCUGUGCAAAUCCAUGCAAAACUGACAGCGGUUGACCAGGCUCACCACUGGGACG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCCUCCCAUCCUGAAAU- - G - -| UUU UUUUUU
GGUU GC GCUGUUAGUUUUGC UGG UUUGC CAGC A
CCAG UG CGACAGUCAAAACG ACC AAACG GUCG U
GCAGGGUCACCACUCGGA U G U U^ U-- CAUGUC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ebu-Mir-19-P2e_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGUUUUGCUGGUUUGCUUUCAGC -23
Get sequence
|
|---|
| Mature sequence |
Ebu-Mir-19-P2e_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGUGCAAAUCCAUGCAAAACUGA -62
Get sequence
|
|---|
