Mir-19-P2e

MirGeneDB ID

Ebu-Mir-19-P2e

Family name

MIR-19 (all species)

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-19-P1f

Orthologues

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Vertebrata

Genome context
(Eburgeri_3)

FYBX02010694.1: 1553451-1553512 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2e)

Mir-17-P1e FYBX02010694.1: 1552137-1552201 [+] UCSC Ensembl
Mir-17-P2e FYBX02010694.1: 1552447-1552509 [+] UCSC Ensembl
Mir-17-P3e FYBX02010694.1: 1552582-1552644 [+] UCSC Ensembl
Mir-17-P4e FYBX02010694.1: 1553249-1553308 [+] UCSC Ensembl
Mir-19-P2e FYBX02010694.1: 1553451-1553512 [+] UCSC Ensembl
Mir-92-P1e FYBX02010694.1: 1553862-1553920 [+] UCSC Ensembl
Mir-92-P2e FYBX02010694.1: 1554002-1554063 [+] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

CCCUCCCAUCCUGAAAUGGUUGCGGCUGUUAGUUUUGCUGGUUUGCUUUCAGCUUUUUUAUCUGUACGCUGUGCAAAUCCAUGCAAAACUGACAGCGGUUGACCAGGCUCACCACUGGGACG

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Structure

        10         20         30         40         50        60
CCCUCCCAUCCUGAAAU-    -  G              -   -|    UUU    UUUUUU 
                  GGUU GC GCUGUUAGUUUUGC UGG UUUGC   CAGC      A
                  CCAG UG CGACAGUCAAAACG ACC AAACG   GUCG      U
GCAGGGUCACCACUCGGA    U  G              U   U^    U--    CAUGUC 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ebu-Mir-19-P2e_5p* (predicted)

mirBase accession

None

Sequence

0- AGUUUUGCUGGUUUGCUUUCAGC -23

Get sequence

Mature sequence

Ebu-Mir-19-P2e_3p

mirBase accession

None

Sequence

39- UGUGCAAAUCCAUGCAAAACUGA -62

Get sequence