MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-142-v3

Family name MIR-142 (all species)
Seed GUAGUGU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-142-v1  Ebu-Mir-142-v2  Ebu-Mir-142-v4 
Orthologues
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02010728.1: 1342342-1342400 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUCAUUGCUGGUGGACAGUGCAGUUAUCCAUAAAGUAGAAAGCACUACUAGGCCUCUCUCCAAGUGUAGUGUUUCCUACUUUAUGGAUAAGUGUACUGUGAUCUACAGACCCGACAA
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Structure
        10          20        30        40        50         
CAGUCAUUGCUGGUGGA--|      G               A         UAGGCCUC 
                   CAGUGCA UUAUCCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AAUAGGUAUUUCAUC UUUGUGAUG        U
AACAGCCCAGACAUCUAGU^      G               C         UGAACCUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ebu-Mir-142-v3_5p* (predicted)

mirBase accessionNone
Sequence
0- CAUAAAGUAGAAAGCACUACUAG -23
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Mature sequence

Ebu-Mir-142-v3_3p

mirBase accessionNone
Sequence
36- UGUAGUGUUUCCUACUUUAUGGA -59
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