| MirGeneDB ID | Eba-Mir-12590 |
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| Family name |
MIR-12590 (all species) |
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| Species |
Epimenia (Solenogaster) (Epimenia babai) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Agr-Mir-12590
Mom-Mir-12590
War-Mir-12590-P1a
War-Mir-12590-P1b
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| Node of Origin (locus) |
Aculifera
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| Node of Origin (family) |
Aculifera
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Genome context
(GCA_011762755.2_ASM1176275v2_Epimenia) |
WURV02041744.1: 1780-1840 [-]
Ensembl
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| Seed |
CUGGCGG |
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Precursor
(pre-Mir +30nt flank) |
AUACAAAAAUACAGACUGACACUCGCCUACCCCUUCCUUUUCUCGCCAGGUGGCGCAUUUCGAAAUUCUUCUGGCGGGCGAAGAAAGAGGCGGGCGUUCUGUCAUGUUCACCAGAGCGAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUACAAAAAUACAGACU- CU-| UA C C U UGGCGCAUU
GACA CGCC CC CUU CUUU CUCGCCAGG \
CUGU GCGG GG GAA GAAG GGGCGGUCU U
GAAGCGAGACCACUUGUA CUU^ GC A A C UCUUAAAGC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Eba-Mir-12590_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCCUUCCUUUUCUCGCCAGGUGG -23
Get sequence
|
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| Mature sequence |
Eba-Mir-12590_3p |
| mirBase accession | None |
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| Sequence |
39- UCUGGCGGGCGAAGAAAGAGGC -61
Get sequence
|
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