MirGeneDB ID | Dpu-Mir-92-o46 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Common water flea (Daphnia pulex) |
MiRBase ID |
|
Paralogues |
Dpu-Mir-92-o47
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Dma-Mir-92-o46
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Bilateria
|
Genome context (Daphnia_pulex.V1.0) |
DAPPUscaffold_38: 876143-876215 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAGACUGCAUGUUAUUUGAUACGAAGGGUAGGCUUUGACUGGUGGCAAUUUUUCAUCUAUGCCUCGAAAUAUGGCAGAAAUAUUGCACUCGUCCCGGCCUGUCUUUUGUAUUCACAUUCGACGAUAUGUAAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAGACUGCAUGUUAUUU--| GU UU U G UUUUCAUCUAUGCCU
GAUACGAAGG AGGCU GAC GGUG CAAU C
UUAUGUUUUC UCCGG CUG UCAC GUUA G
CAAUGUAUAGCAGCUUACAC^ UG CC C - UAAAGACGGUAUAAA
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dpu-Mir-92-o46_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGCUUUGACUGGUGGCAAUUU -22
Get sequence
|
Mature sequence |
Dpu-Mir-92-o46_3p |
mirBase accession | None |
Sequence |
51- UAUUGCACUCGUCCCGGCCUGU -73
Get sequence
|