MirGeneDB ID | Dma-Mir-92-o46 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
Dma-Mir-92-o47
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Dpu-Mir-92-o46
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
Daphnia
|
Node of Origin (family) |
Bilateria
|
Genome context (DMA_ASM399081) |
NC_046181.1: 7370656-7370733 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUGAUUCAUUUCGAAUUGAUUUGAAGGGCAGGCUUUGAUGGGUGUCAAUUUUUCGACUAAUUGCCAAAGAUGAAUGAGGCAGAAAUAUUGCACUCGUCCCGGCCUGUCUUUUAAUAUCAUGCUACGACGGACUUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUGAUUCAUUUCGAAU- -| UU U UUUUCGACUAAUUGCCAA
UGAU UUGAAGGGCAGGCU GAUGGGUG CAAU \
ACUA AAUUUUCUGUCCGG CUGCUCAC GUUA A
UUUUUCAGGCAGCAUCGU U^ CC - UAAAGACGGAGUAAGUAG
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Star sequence |
Dma-Mir-92-o46_5p* |
mirBase accession | None |
Sequence |
0- AGGCUUUGAUGGGUGUCAAUUUU -23
Get sequence
|
Mature sequence |
Dma-Mir-92-o46_3p |
mirBase accession | None |
Sequence |
56- UAUUGCACUCGUCCCGGCCUGU -78
Get sequence
|