MirGeneDB 2.1

MirGeneDB ID

Dma-Mir-92-o46

Family name MIR-92 (all species)
Seed AUUGCAC
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-92-o47 
Orthologues Asu-Mir-92  Cel-Mir-92  Dpu-Mir-92-o46  Esc-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) Daphnia
Node of Origin (family) Bilateria
Genome context
(DMA_ASM399081)
NC_046181.1: 7370656-7370733 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAUUCAUUUCGAAUUGAUUUGAAGGGCAGGCUUUGAUGGGUGUCAAUUUUUCGACUAAUUGCCAAAGAUGAAUGAGGCAGAAAUAUUGCACUCGUCCCGGCCUGUCUUUUAAUAUCAUGCUACGACGGACUUUUU
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Structure
        10         20         30        40        50        60         
UUUGAUUCAUUUCGAAU-    -|             UU        U    UUUUCGACUAAUUGCCAA 
                  UGAU UUGAAGGGCAGGCU  GAUGGGUG CAAU                  \
                  ACUA AAUUUUCUGUCCGG  CUGCUCAC GUUA                  A
UUUUUCAGGCAGCAUCGU    U^             CC        -    UAAAGACGGAGUAAGUAG 
      130       120       110       100         90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-92-o46_5p*

mirBase accessionNone
Sequence
0- AGGCUUUGAUGGGUGUCAAUUUU -23
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Mature sequence

Dma-Mir-92-o46_3p

mirBase accessionNone
Sequence
56- UAUUGCACUCGUCCCGGCCUGU -78
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