| MirGeneDB ID | Dgr-Mir-2-o39 |
|---|---|
| Family name | MIR-2 (all species) |
| Species | Dimorphilus gyrociliatus (Dimorphilus gyrociliatus) |
| MiRBase ID | |
| Paralogues | Dgr-Mir-2-o36 Dgr-Mir-2-o37 Dgr-Mir-2-o38 Dgr-Mir-2-P12 |
| Orthologues | Gsp-Mir-2 Ple-Mir-2 |
| Node of Origin (locus) | D. gyrociliatus |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_904063045.1_Dgyrociliatus) |
CAJFCJ010000007.1: 2553392-2553451 [+] |
| Clustered miRNAs (< 50kb from Mir-2-o39) |
Mir-71
CAJFCJ010000007.1: 2552629-2552686 [+]
Mir-2-o36 CAJFCJ010000007.1: 2552877-2552934 [+] Mir-2-P12 CAJFCJ010000007.1: 2552989-2553045 [+] Mir-2-o37 CAJFCJ010000007.1: 2553124-2553185 [+] Mir-2-o38 CAJFCJ010000007.1: 2553257-2553315 [+] Mir-2-o39 CAJFCJ010000007.1: 2553392-2553451 [+] |
| Seed | AUCACAG |
| Precursor (pre-Mir +30nt flank) |
AACAGCUACCUUAUUCUUUGCAAGUAGGGCGAAUCAAAGUAGUUGUGGUGUGCUGUCUUUCGGUUCAUAUCACAGCUUGCUUUGAUGAGCUUAGCUUUGCUCUUUGAUCACUGUCGAAUUGet precursor sequence |
| Structure | 10 20 30 40 50 AACAGCUACCUUAUUCUUU- - AG GA -| CUGUCU GC AAGU GGC AUCAAAGU AGUUGUGGUGUG \ CG UUCG UCG UAGUUUCG UCGACACUAUAC U UUAAGCUGUCACUAGUUUCU U AU AG U^ UUGGCU . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Dgr-Mir-2-o39_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GAAUCAAAGUAGUUGUGGUGUG -22
Get sequence
|
| Mature sequence | Dgr-Mir-2-o39_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UAUCACAGCUUGCUUUGAUGAGC -60
Get sequence
|
