MirGeneDB 2.1

MirGeneDB ID

Cte-Mir-2686-P1

Family name MIR-2686 (all species)
Seed AGAUGUU
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-2686c
Paralogues Cte-Mir-2686-P2  Cte-Mir-2686-P3 
Orthologues Efe-Mir-2686-o1 
Node of Origin (locus) C. teleta
Node of Origin (family) Annelida
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_174: 220483-220549 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-2686-P1)
Mir-2686-P1 CAPTEscaffold_174: 220483-220549 [+] Ensembl
Mir-2686-P2 CAPTEscaffold_174: 220637-220693 [+] Ensembl
Mir-2686-P3 CAPTEscaffold_174: 220806-220865 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAUGAGCCCUCGCGGUCAUAUCACAAGAACCUAUAUUUGGGACAGCUCUCAUGGAACUCUUGAUAUCAUAGAAAGAUGUUCUUAAUGUAGGUUUCUUGUGCUGACCUUUAUCAACGAACUGACCC
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Structure
        10            20        30         40        50        60  
UUCAUGAGCCCUCGCGG----|  UAU        -        U      G  C  AUGGAACUC 
                     UCA   CACAAGAA CCUAUAUU GGGACA CU UC         U
                     AGU   GUGUUCUU GGAUGUAA UCUUGU GA AG         U
CCCAGUCAAGCAACUAUUUCC^  C--        U        U      A  A  AUACUAUAG 
     120       110         100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cte-Mir-2686-P1_5p* (predicted)

mirBase accessionNone
Sequence
0- ACCUAUAUUUGGGACAGCUCUC -22
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Mature sequence

Cte-Mir-2686-P1_3p

mirBase accessionMIMAT0013538
Sequence
44- AAGAUGUUCUUAAUGUAGGUUUC -67
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