| MirGeneDB ID | Cja-Mir-7180 |
|---|
| Family name |
MIR-7180 (all species) |
|---|
| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-7180
Cfa-Mir-7180
Dno-Mir-7180
Mml-Mir-7180
Ocu-Mir-7180
Pab-Mir-7180
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021933.1: 37485462-37485519 [-]
UCSC
Ensembl
|
|---|
| Seed |
GGCCUCU |
|---|
Precursor
(pre-Mir +30nt flank) |
GAGGCUUUCUGAGGAUUGGUGGUUUCAGGGAGUGUACUUCCUGAGGCCUCUGGGUAUAAAAUUACUGUGGCCUCUGGGUGUGUACCCUCUGCGGCUUCCAGAUUCCUACAUCCUGCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGGCUUUCUGAGGAUU--| U UU A U U UCUGGGUAU
GG GGU CAGGG GUGUAC UCC GAGGCC A
CC UCG GUCUC CAUGUG GGG CUCCGG A
GACGUCCUACAUCCUUAGA^ U GC C U U UGUCAUUAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Cja-Mir-7180_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUACUUCCUGAGGCCUCU -21
Get sequence
|
|---|
| Mature sequence |
Cja-Mir-7180_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGGCCUCUGGGUGUGUACCCU -58
Get sequence
|
|---|
