MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-556-P1

Family name MIR-556 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-556-P2 
Orthologues Hsa-Mir-556  Mml-Mir-556  Pab-Mir-556 
Node of Origin (locus) C. jacchus
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021932.1: 15740715-15740774 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-556-P1)		 Mir-556-P2 CM021932.1: 15740713-15740772 [-] UCSC Ensembl
Mir-556-P1 CM021932.1: 15740715-15740774 [+] UCSC Ensembl
Seed AUGAGCU
Precursor
(pre-Mir +30nt flank)		 
CUAGGAGUUCAUGAAGAUAGCAGUGGGAAAGAUGAGCUCAUUGUAAUAUGCGCUUCAUUUAUGCAUUUCAUAUUACAAUGAGCUCAUCUUUUUUAUUACUACUUUAAAGAAGGCCUUCUA
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Structure
        10          20        30        40        50         
CUAGGAGUUCAUGAAGA--|  C                             CGCUUCAU 
                   UAG AGUGGGAAAGAUGAGCUCAUUGUAAUAUG        U
                   AUC UUAUUUUUUCUACUCGAGUAACAUUAUAC        U
AUCUUCCGGAAGAAAUUUC^  A                             UUUACGUA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Cja-Mir-556-P1_5p (predicted)
mirBase accessionNone
Sequence 
0- GAUGAGCUCAUUGUAAUAUGC -21
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Co-mature sequence

Cja-Mir-556-P1_3p (predicted)
mirBase accessionNone
Sequence 
39- AUAUUACAAUGAGCUCAUCUU -60
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