| MirGeneDB ID | Pab-Mir-556 |
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| Family name |
MIR-556 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cja-Mir-556-P1
Cja-Mir-556-P2
Hsa-Mir-556
Mml-Mir-556
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 87899358-87899417 [-]
UCSC
Ensembl
|
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| Seed |
AUGAGCU |
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Precursor
(pre-Mir +30nt flank) |
CUAGGAGUUCAUGAAGAUAGUGAUAAGAAAGAUGAGCUCAUUGUAAUAUGAGCUUCAUUUAUGCAUUUCAUAUUACAAUUAGCUCAUCUUUUUUAUGACUACCUUCAACAAGGCCUUCUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAGGAGUUCAUGAAGA--| G C GCUUCAU
UAGU AUAAGAAAGAUGAGCU AUUGUAAUAUGA U
AUCA UAUUUUUUCUACUCGA UAACAUUAUACU U
AUCUUCCGGAACAACUUCC^ G U UUACGUA
. 110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-556_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- GAUGAGCUCAUUGUAAUAUGA -21
Get sequence
|
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| Co-mature sequence |
Pab-Mir-556_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- AUAUUACAAUUAGCUCAUCUU -60
Get sequence
|
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