MirGeneDB 2.1

MirGeneDB ID

Cin-Let-7-P2o5

Family name LET-7 (all species)
Seed GAGGUAG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-let-7a-2
Paralogues Cin-Let-7-P1  Cin-Let-7-P2o1-v1  Cin-Let-7-P2o1-v2  Cin-Let-7-P2o2  Cin-Let-7-P2o3  Cin-Let-7-P2o4 
Orthologues Aae-Let-7  Bge-Let-7  Bpl-Let-7  Cgi-Let-7  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dpu-Let-7  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Hme-Let-7  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Npo-Let-7  Obi-Let-7  Ovu-Let-7  Pfl-Let-7  Pmi-Let-7  Sko-Let-7  Spu-Let-7  Tca-Let-7  Xbo-Let-7 
Node of Origin (locus) C. intestinalis
Node of Origin (family) Bilateria
Genome context
(ci3)
4: 2158340-2158414 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2o5)
Let-7-P2o1-v1 4: 2157421-2157502 [+] UCSC Ensembl
Let-7-P2o1-v2 4: 2157422-2157502 [+] UCSC Ensembl
Let-7-P2o2 4: 2157552-2157624 [+] UCSC Ensembl
Let-7-P2o3 4: 2157948-2158018 [+] UCSC Ensembl
Let-7-P2o4 4: 2158141-2158206 [+] UCSC Ensembl
Let-7-P2o5 4: 2158340-2158414 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUUAAGAACUAUAGUUGUCGAUAUUAUGAGGUAGUAGGUUAUGCAGUUUUGCGACAUUAUUCUCGUUGCGUUGGAGAUAACUGUGUAGCCUACUGACUCUAAUGUCUUCAGCUCUCUCUUCAAGCACUUUC
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Structure
        10          20        30        40        50        60       
UUUUUUUAAGAACUAUA--|   UC       U   G                 UUGCGACAUUAUUC 
                   GUUG  GAUAUUA GAG UAGUAGGUUAUGCAGUU              U
                   CGAC  CUGUAAU CUC GUCAUCCGAUGUGUCAA              C
CUUUCACGAACUUCUCUCU^   UU       -   A                 UAGAGGUUGCGUUG 
   130       120       110        100        90        80        70
Deep sequencing
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CommentThis paralogue is related to the vertebrate P2s but it is not yet possible to disentangle the phylogenetic history of vertebrate Let-7 P2s and thus the ascidian genes are classified as orphans pending further data.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Mature sequence

Cin-Let-7-P2o5_5p

mirBase accessionMIMAT0006086
Sequence
0- UGAGGUAGUAGGUUAUGCAGUU -22
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Star sequence

Cin-Let-7-P2o5_3p*

mirBase accessionMIMAT0015248
Sequence
54- CUGUGUAGCCUACUGACUCUA -75
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