MirGeneDB 2.1
MirGeneDB ID

Cbr-Mir-64-o1

Family name MIR-64 (all species)
Seed AUGACAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-64c
Paralogues Cbr-Mir-64-o2  Cbr-Mir-64-o3  Cbr-Mir-64-o4 
Orthologues Cel-Mir-64-P1 
Node of Origin (locus) C. briggsae
Node of Origin (family) Caenorhabditis
Genome context
(CB4)		 III: 869360-869420 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-64-o1)		 Mir-64-o4 III: 868825-868890 [-] Ensembl
Mir-64-o3 III: 869105-869166 [-] Ensembl
Mir-64-o2 III: 869227-869290 [-] Ensembl
Mir-64-o1 III: 869360-869420 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCAGCCUAUUCUACUCGGCCUCGCCGACCAUGACACACUGGCUGGUCUGGAAUGAUUUCGGCUCCUCCGGUCCGCCCGAGUGCCACGAAACGGCGAGAGCCUUGGCAUUCAGUUCUAUU
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Structure
        10        20         30         40        50        60
AGCCAGCCUAUUCUACUC   -       ACCA-| A   ACU   U  U     AUGAUU 
                  GGC CUCGCCG     UG CAC   GGC GG CUGGA      U
                  CCG GAGCGGC     AC GUG   CCG CC GGCCU      C
UUAUCUUGACUUACGGUU   A       AAAGC^ C   AGC   -  U     CCUCGG 
 .       110       100        90        80         70
Deep sequencing
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CommentIt is unclear if any of the MIR-64 family members in C. briggsae are orthologues of any of the MIR-64 members in C. elegans and thus they are currently classified as orphans pending further data.
3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-64-o1_5p
mirBase accessionMIMAT0029603
Sequence 
0- CAUGACACACUGGCUGGUCUGGA -23
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Star sequence

Cbr-Mir-64-o1_3p*
mirBase accessionNone
Sequence 
39- CGGUCCGCCCGAGUGCCACGAA -61
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