MirGeneDB 2.1
MirGeneDB ID

Cbr-Mir-64-o4

Family name MIR-64 (all species)
Seed AUGACAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-65
Paralogues Cbr-Mir-64-o1  Cbr-Mir-64-o2  Cbr-Mir-64-o3 
Orthologues
Node of Origin (locus) C. briggsae
Node of Origin (family) Caenorhabditis
Genome context
(CB4)		 III: 868825-868890 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-64-o4)		 Mir-64-o4 III: 868825-868890 [-] Ensembl
Mir-64-o3 III: 869105-869166 [-] Ensembl
Mir-64-o2 III: 869227-869290 [-] Ensembl
Mir-64-o1 III: 869360-869420 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGGUAAGGUCCUAAAGACCCUCACCAAUCAUGACACUGAAGCGGGAAUGGAAGCGUAGUCAGAUUGCAAUUCCUACCGGGUUCAGUGUCAUACUUGGUGCGGAUGAGUCUGCAAGUUUUUAAAA
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Structure
        10        20          30        40         50        60   
UAUGGUAAGGUCCUAAAGAC--  U      UC           G-|  GAAU    GCGUAGUC 
                      CC CACCAA  AUGACACUGAA  CGG    GGAA        \
                      GG GUGGUU  UACUGUGACUU  GCC    CCUU        A
AAAAUUUUUGAACGUCUGAGUA  C      CA           GG^  AU--    AACGUUAG 
    120       110       100        90        80          70
Deep sequencing
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CommentIt is unclear if any of the MIR-64 family members in C. briggsae are orthologues of any of the MIR-64 members in C. elegans and thus they are currently classified as orphans pending further data.
3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-64-o4_5p
mirBase accessionMIMAT0011484
Sequence 
0- CAUGACACUGAAGCGGGAAUGGAA -24
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Co-mature sequence

Cbr-Mir-64-o4_3p
mirBase accessionMIMAT0011485
Sequence 
43- CCUACCGGGUUCAGUGUCAUACU -66
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