Mir-2222-P1a

MirGeneDB ID

Cbr-Mir-2222-P1a

Family name

MIR-2222 (all species)

Seed

AUCACAG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

Paralogues

Cbr-Mir-2222-P1b Cbr-Mir-2222-P2a Cbr-Mir-2222-P2b

Orthologues

Node of Origin (locus)

C. briggsae

Node of Origin (family)

C. briggsae

Genome context
(CB4)

X: 20535658-20535719 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2222-P1a)

Mir-7587 X: 20533902-20533963 [+] Ensembl
Mir-2222-P2a X: 20535807-20535871 [+] Ensembl
Mir-2222-P2b X: 20537177-20537241 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUAUUGGACCGAUCUCAGUACGACCUGCCCUUGAUCUUUGUUUUCUGAGAUUUUCUAGAGCUCGAAAAUAUCACAGCAAAGAUUGAGCGCAGGUCCACUGGGACCCAACAAUCCUACUGU

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Structure

        10           20        30        40        50        60  
AGAUAUUGGACCGAUCU---|   AC       C  UG       UUUU   A   UUUCUAGA 
                    CAGU  GACCUGC CU  AUCUUUG    CUG GAU        G
                    GUCA  CUGGACG GA  UAGAAAC    GAC CUA        C
UGUCAUCCUAACAACCCAGG^   C-       C  GU       ----   A   UAAAAGCU 
120       110       100         90        80            70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

01	02	03	04	05	06	07	08	09	10	11	12	13	14	15	16	Cb	Ea	Ma	Yo

Star sequence

Cbr-Mir-2222-P1a_5p*

mirBase accession

None

Sequence

0- CCUUGAUCUUUGUUUUCUGAGAUU -24

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Mature sequence

Cbr-Mir-2222-P1a_3p

mirBase accession

None

Sequence

40- UAUCACAGCAAAGAUUGAGCGC -62

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