MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-12494-P5

Family name MIR-12494 (all species)
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-12494-P1  Bla-Mir-12494-P2a  Bla-Mir-12494-P2b  Bla-Mir-12494-P3  Bla-Mir-12494-P4 
Orthologues Bfl-Mir-12494 
Node of Origin (locus) B. lanceolatum
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)		 Sc0000025: 2402035-2402096 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-12494-P5)		 Mir-12494-P1 Sc0000025: 2400435-2400490 [+] Ensembl
Mir-12494-P2a Sc0000025: 2400930-2400989 [+] Ensembl
Mir-12494-P3 Sc0000025: 2401083-2401144 [+] Ensembl
Mir-12494-P4 Sc0000025: 2401442-2401501 [+] Ensembl
Mir-12494-P2b Sc0000025: 2401852-2401911 [+] Ensembl
Mir-12494-P5 Sc0000025: 2402035-2402096 [+] Ensembl
Seed UCCGGGA
Precursor
(pre-Mir +30nt flank)		 
UAGACAAACCUUCAUUUGGUUUAAAUGGUGAUCCGGGAUUAUUAAGAACAUGAUUUCAUUCUAUAUUUUCAUGUUCUUAUAAUCUCGAAUCUCUGUUCAAACAGUCAAGCAUAAAGAAAUAA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UAGACAAACCUUCAUUUG--|   A     U   C         U          UUUCAUU 
                    GUUU AAUGG GAU CGGGAUUAU AAGAACAUGA       \
                    CAAA UUGUC CUA GCUCUAAUA UUCUUGUACU       C
AAUAAAGAAAUACGAACUGA^   C     U   A         -          UUUAUAU 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-12494-P5_5p
mirBase accessionNone
Sequence 
0- AUCCGGGAUUAUUAAGAACAUGA -23
Get sequence
Star sequence

Bla-Mir-12494-P5_3p*
mirBase accessionNone
Sequence 
40- AUGUUCUUAUAAUCUCGAAUCU -62
Get sequence