MirGeneDB 3.0
MirGeneDB ID

Bko-Mir-12593

Family name MIR-12593 (all species)
Species Monogonont Rotifer 2 (Brachionus koreanus)
MiRBase ID
Paralogues
Orthologues Ava-Mir-12593-P1a  Ava-Mir-12593-P1b  Ava-Mir-12593-P2a  Ava-Mir-12593-P2b  Bpl-Mir-12593  Nag-Mir-12593-v1  Ple-Mir-12593  Sne-Mir-12593 
Node of Origin (locus) Rotifera
Node of Origin (family) Rotifera
Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genomic)		 PJRA01000401.1: 1138039-1138115 [+] Ensembl
Seed CAUUCUC
Precursor
(pre-Mir +30nt flank)		 
CCAAUUUGAGCAAGAGUGUUUCUGUUAAAAGCCCCUAUUUUGGAGAAUAAUGAUGGUUAUGAAGUAAACUAAAUGAGUUUAUUCACAUUCUCUUAGAUAGUGGCCUUUUGCGGAAAAUUUACACCUAUUUUAAUAUU
Get precursor sequence
Structure
        10           20        30        40        50        60        
CCAAUUUGAGCAAGAGUG---|      U   A   C      U       AA   UGGUUAUGAAGUAA 
                     UUUCUGU AAA GCC CUAUUU GGAGAAU  UGA              \
                     AAAGGCG UUU CGG GAUAGA UCUCUUA  ACU              A
UUAUAAUUUUAUCCACAUUUA^      U   C   U      U       C-   UAUUUGAGUAAAUC 
     130       120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To To To
Star sequence

Bko-Mir-12593_5p*
mirBase accessionNone
Sequence 
0- GCCCCUAUUUUGGAGAAUAAUGA -23
Get sequence
Mature sequence

Bko-Mir-12593_3p
mirBase accessionNone
Sequence 
54- ACAUUCUCUUAGAUAGUGGCCUU -77
Get sequence