| MirGeneDB ID | Ple-Mir-12593 |
|---|
| Family name |
MIR-12593 (all species) |
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| Species |
Thorny-headed worm 2 (Pomphorhynchus laevis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Ava-Mir-12593-P1a
Ava-Mir-12593-P1b
Ava-Mir-12593-P2a
Ava-Mir-12593-P2b
Bko-Mir-12593
Bpl-Mir-12593
Nag-Mir-12593-v1
Sne-Mir-12593
|
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| Node of Origin (locus) |
Rotifera
|
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| Node of Origin (family) |
Rotifera
|
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Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02001274.1: 31493-31548 [-]
Ensembl
|
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| Seed |
CAUUCUC |
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Precursor
(pre-Mir +30nt flank) |
GAUACUCCAGCUCACAAGCAUCGUUGGUACACUGCUAUCUUAGGGAUAGUGAAAGCCAGUAUUCACAUUCUCUUAUGUAGCAGUGUUCCCUUACAAUGCAAUACACAUGAUGGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUACUCCAGCUCACAAG C U--| U CUU UA AAGC
CAU GU GG ACACUGCUAU AGGGA GUGA C
GUA CA CC UGUGACGAUG UCUCU CACU A
AACGGUAGUACACAUAAC A UUC^ U UAU UA UAUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ple-Mir-12593_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUGCUAUCUUAGGGAUAGUGA -22
Get sequence
|
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| Mature sequence |
Ple-Mir-12593_3p |
| mirBase accession | None |
|---|
| Sequence |
34- ACAUUCUCUUAUGUAGCAGUGU -56
Get sequence
|
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