MirGeneDB 2.1

MirGeneDB ID

Bge-Novel-2-P5

Family name BGE-NOVEL-2 (all species)
Seed CUCGAAC
Species Cockroach (Blattella germanica)
MiRBase ID
Paralogues Bge-Novel-2-P1a  Bge-Novel-2-P1b  Bge-Novel-2-P2  Bge-Novel-2-P3  Bge-Novel-2-P4 
Orthologues
Node of Origin (locus) B. germanica
Node of Origin (family) B. germanica
Genome context
(Bger_2.0)
JPZV02055629.1: 521-576 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UACAAGGCGAGUGAGCAUGGUUCUGCACAGGCUCGAACUCAAGUCUGAACGAUAAAUUUAAUUUGUUCAAACUUUUGUCCGAGUCUAUGCGGAAUCACAGAUCAUCCAUUGGUCGA
Get precursor sequence
Structure
        10          20        30        40        50       
UACAAGGCGAGUGAGCA--|         C       A  UC    C       UAAA 
                   UGGUUCUGCA AGGCUCG AC  AAGU UGAACGA    U
                   ACUAAGGCGU UCUGAGC UG  UUCA ACUUGUU    U
AGCUGGUUACCUACUAGAC^         A       C  UU    A       UAAU 
    110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Ny Ny Ny Ny Ny Ny Ny Ny Ov Co Co Em Em Em Em Em Em Em Em Em Em No No
Mature sequence

Bge-Novel-2-P5_5p

mirBase accessionNone
Sequence
0- GCUCGAACUCAAGUCUGAACGA -22
Get sequence
Star sequence

Bge-Novel-2-P5_3p*

mirBase accessionNone
Sequence
34- GUUCAAACUUUUGUCCGAGUCU -56
Get sequence