MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-9-o18

Family name MIR-9 (all species)
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-79
Paralogues Asu-Mir-9-o17 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dgr-Mir-9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mgi-Mir-9-P18  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) A.suum
Node of Origin (family) Bilateria
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold46: 2189447-2189505 [-]
Seed UAAAGCU
Precursor
(pre-Mir +30nt flank)		 
CGUUGUUUACCUGAGUGGUGUUGUCUUUCCCUUUGGUUAUCUGGCUGUAUGAGUGAGCCAUAACAUCAUAAAGCUAGGUUACCAAAGCUAAGCACAAUGCCUAAGCGCCCUAUCCAUUC
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Structure
        10          20         30        40        50         
CGUUGUUUACCUGAGUG--       -|  UCC       U        G     GUGAGC 
                   GUGUUGU CUU   CUUUGGU AUCUGGCU UAUGA      \
                   CGUAACA GAA   GAAACCA UGGAUCGA AUACU      C
CUUACCUAUCCCGCGAAUC       C^  UC-       U        A     ACAAUA 
       110       100        90         80        70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-9-o18_5p*
mirBase accessionMIMAT0021472
Sequence 
0- CUUUGGUUAUCUGGCUGUAUGA -22
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Mature sequence

Asu-Mir-9-o18_3p
mirBase accessionMIMAT0021473
Sequence 
37- AUAAAGCUAGGUUACCAAAGCU -59
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