MirGeneDB 3.0
MirGeneDB ID

Aqu-Mir-2018

Family name MIR-2018 (all species)
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2018
Paralogues
Orthologues Emu-Mir-2018-P1  Emu-Mir-2018-P2 
Node of Origin (locus) Demospongiae
Node of Origin (family) Demospongiae
Genome context
(GCF_000090795.1_v1.0_SPONGE)		 NW_003546273.1: 58780-58909 [-] Ensembl
Seed GUCGGAG
Precursor
(pre-Mir +30nt flank)		 
UACAGCUACAAGGCUGCAUGAGUUACAGUGUGUCGGAGCCGGAGGUUCCGGAGAAAGAUAAAAGCCCAUGCAGGCAUUGGAAUGACAUAAACCGGUUGUACUGGUUUGUUCCAUUGUUUGGUGCAAUGGCUUAGCCUCCGGGACCUUGGACCUCGACACACAGUGCCAUGCAAGAAAUGACCUUAUUUGG
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Structure
        10            20        30         40        50        60        70        80        90    
UACAGCUACAAGGCUGC----|  A  U  A        - AG   G          GAAAGAUAAAAGCCCAUGCAGGCAUUGGAAUGACAUAAACC 
                     AUG GU AC GUGUGUCG G  CCG AGGUUCCGGA                                         G
                     UAC CG UG CACACAGC C  GGU UCCAGGGCCU                                         G
GGUUUAUUCCAGUAAAGAACG^  -  -  A        U CA   -          CCGAUUCGGUAACGUGGUUUGUUACCUUGUUUGGUCAUGUU 
.       180       170         160       150        140       130       120       110       100
Deep sequencing
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CommentThis miRNA family is only known in G3 + G4 demospoonges.
3' NTU No
MotifsNo
Tissue expression
- +
Ad Co Ju Pr
Mature sequence

Aqu-Mir-2018_5p
mirBase accessionMIMAT0009694
Sequence 
0- UGUCGGAGCCGGAGGUUCCGGA -22
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Star sequence

Aqu-Mir-2018_3p*
mirBase accessionMIMAT0009695
Sequence 
108- CGGGACCUUGGACCUCGACACA -130
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