| MirGeneDB ID | Emu-Mir-2018-P1 |
|---|
| Family name |
MIR-2018 (all species) |
|---|
| Seed |
GUCGGAG |
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| Species |
Muellers freshwater sponge (Ephydatia muelleri) |
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| MiRBase ID |
|
|---|
| Paralogues |
Emu-Mir-2018-P2
|
|---|
| Orthologues |
Aqu-Mir-2018
|
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| Node of Origin (locus) |
E. muelleri
|
|---|
| Node of Origin (family) |
Demospongiae
|
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Genome context
(GCA_013339895_Emu) |
JABACO010000010.1: 9538959-9539030 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GUGUACUAAAAUCUUAACAAUGAAGCAGUGUGUCGGAGCCGGAGGUUCCGGAACAAAAGAGUUCACAACAAACUCUAUUCCGGACUCUCUGUCGCCGACACACAGGCAUUGUCUAAGCUACGCGCAUGCGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUACUAAAAUCUUAA----| AAGCA AGC GU ACAAAAGAGUUC
CAAUG GUGUGUCGG CGGAG UCCGGA A
GUUAC CACACAGCC GUCUC AGGCCU C
UCGCGUACGCGCAUCGAAUCU^ GGA-- GCU UC UAUCUCAAACAA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| Comment | This miRNA family is only known in G3 + G4 demospoonges. |
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| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Emu-Mir-2018-P1_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UGUCGGAGCCGGAGGUUCCGGA -22
Get sequence
|
|---|
| Star sequence |
Emu-Mir-2018-P1_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
50- CGGACUCUCUGUCGCCGACACA -72
Get sequence
|
|---|
