MirGeneDB 3.0

MirGeneDB ID

Aqu-Mir-2017

Family name MIR-2017 (all species)
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2017
Paralogues
Orthologues Emu-Mir-2017-P1  Emu-Mir-2017-P2 
Node of Origin (locus) Demospongiae
Node of Origin (family) Demospongiae
Genome context
(GCF_000090795.1_v1.0_SPONGE)
NW_003546545.1: 71864-71947 [-] Ensembl
Seed ACCUGUG
Precursor
(pre-Mir +30nt flank)
ACAGCAAGAGAAGGAAUGGAUGAGGGAUUGAGUACACGGGGUAUGGGUAGUGCUUCCAGCAAGGAUUAUAAUUAUAAAGUCCAUUUAAGCACUACCUGUGCACCUGUGUGCCCAAACCUAUCCAUAUCGAAGCAACUCACAAGA
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Structure
        10            20        30        40         50        60        70 
ACAGCAAGAGAAGGAAU----|   G   GA   A         -           GCUUCCAGCAAGGAUUAUA 
                     GGAU AGG  UUG GUACACGGG GUAUGGGUAGU                   \
                     CCUA UCC  AAC CGUGUGUCC CGUGUCCAUCA                   A
AGAACACUCAACGAAGCUAUA^   -   A-   C         A           CGAAUUUACCUGAAAUAUU 
  140       130       120         110       100        90        80
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Ad Co Ju Pr
Star sequence

Aqu-Mir-2017_5p*

mirBase accessionMIMAT0009692
Sequence
0- AGUACACGGGGUAUGGGUAGU -21
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Mature sequence

Aqu-Mir-2017_3p

mirBase accessionMIMAT0009693
Sequence
62- UACCUGUGCACCUGUGUGCCCA -84
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