MirGeneDB ID | Aqu-Mir-2017 |
Family name |
MIR-2017 (all species) |
Species |
Amphimedon (Amphimedon queenslandica) |
MiRBase ID |
aqu-mir-2017
|
Paralogues |
|
Orthologues |
Emu-Mir-2017-P1
Emu-Mir-2017-P2
|
Node of Origin (locus) |
Demospongiae
|
Node of Origin (family) |
Demospongiae
|
Genome context (GCF_000090795.1_v1.0_SPONGE) |
NW_003546545.1: 71864-71947 [-]
Ensembl
|
Seed |
ACCUGUG |
Precursor (pre-Mir +30nt flank) |
ACAGCAAGAGAAGGAAUGGAUGAGGGAUUGAGUACACGGGGUAUGGGUAGUGCUUCCAGCAAGGAUUAUAAUUAUAAAGUCCAUUUAAGCACUACCUGUGCACCUGUGUGCCCAAACCUAUCCAUAUCGAAGCAACUCACAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
ACAGCAAGAGAAGGAAU----| G GA A - GCUUCCAGCAAGGAUUAUA
GGAU AGG UUG GUACACGGG GUAUGGGUAGU \
CCUA UCC AAC CGUGUGUCC CGUGUCCAUCA A
AGAACACUCAACGAAGCUAUA^ - A- C A CGAAUUUACCUGAAAUAUU
140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Aqu-Mir-2017_5p* |
mirBase accession | MIMAT0009692 |
Sequence |
0- AGUACACGGGGUAUGGGUAGU -21
Get sequence
|
Mature sequence |
Aqu-Mir-2017_3p |
mirBase accession | MIMAT0009693 |
Sequence |
62- UACCUGUGCACCUGUGUGCCCA -84
Get sequence
|