MirGeneDB 2.1

MirGeneDB ID

Aqu-Mir-2014-P2

Family name MIR-2014 (all species)
Seed AGAUUGG
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2016
Paralogues Aqu-Mir-2014-P1 
Orthologues Emu-Mir-2014 
Node of Origin (locus) A. queenslandica
Node of Origin (family) Demospongiae
Genome context
(GCF_000090795.1_v1.0_SPONGE)
NW_003546250.1: 90534-90645 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGGUCUUGAGGUGAUUCAAGAGGCACUGUAGAUUGGGCUUGGUCGGCAGAUGAAUAAAAGAGAUUAAGUUUUUGUCCUUUUUCAAAAGAAGACACUAGCUUGAUGCAACUCUUAAAUCUGCUGUCCAGUCUUAAUCUACAGGGCAGACAGUCCUCAGCAGUUCCAUUAGU
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Structure
        10        20          30        40        50        60        70        80     
AAGGGUCUUGAGGUGAUUCAAGAG--| A            C    U       UGAAUAAAAGAGAUUAAGUUUUUGUCCUUUUU 
                          GC CUGUAGAUUGGG UUGG CGGCAGA                                C
                          CG GACAUCUAAUUC GACC GUCGUCU                                A
UGAUUACCUUGACGACUCCUGACAGA^ G            U    U       AAAUUCUCAACGUAGUUCGAUCACAGAAGAAA 
170       160       150       140       130       120       110       100        90
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Co Ju Pr
Mature sequence

Aqu-Mir-2014-P2_5p

mirBase accessionMIMAT0009690
Sequence
0- UAGAUUGGGCUUGGUCGGCAGA -22
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Star sequence

Aqu-Mir-2014-P2_3p*

mirBase accessionMIMAT0009691
Sequence
90- UGCUGUCCAGUCUUAAUCUACA -112
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